Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0082 and Psyr_0083 are separated by 13 nucleotides Psyr_0083 and Psyr_0084 are separated by 94 nucleotides Psyr_0084 and Psyr_0085 are separated by 151 nucleotides Psyr_0085 and Psyr_0086 are separated by 200 nucleotides
Psyr_0082: Psyr_0082 - Binding-protein-dependent transport systems inner membrane component, at 88,464 to 89,336
_0082
Psyr_0083: Psyr_0083 - Binding-protein-dependent transport systems inner membrane component, at 89,350 to 90,171
_0083
Psyr_0084: Psyr_0084 - extracellular solute-binding protein, family 1, at 90,266 to 91,276
_0084
Psyr_0085: Psyr_0085 - conserved hypothetical protein, at 91,428 to 91,607
_0085
Psyr_0086: Psyr_0086 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 91,808 to 93,727
_0086
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.329 kb on + strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.330 kb on - strand at 89.450 kb on + strand, within Psyr_0083 at 89.450 kb on + strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083 at 89.451 kb on - strand, within Psyr_0083 at 89.819 kb on + strand, within Psyr_0083 at 89.819 kb on + strand, within Psyr_0083 at 89.820 kb on - strand, within Psyr_0083 at 89.913 kb on - strand, within Psyr_0083 at 89.970 kb on - strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.064 kb on + strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.065 kb on - strand, within Psyr_0083 at 90.085 kb on + strand, within Psyr_0083 at 90.085 kb on + strand, within Psyr_0083 at 90.088 kb on + strand, within Psyr_0083 at 90.088 kb on + strand, within Psyr_0083 at 90.089 kb on - strand at 90.107 kb on + strand at 90.107 kb on + strand at 90.107 kb on + strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.108 kb on - strand at 90.119 kb on + strand at 90.119 kb on + strand at 90.159 kb on + strand at 90.160 kb on - strand at 90.171 kb on + strand at 90.171 kb on + strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.172 kb on - strand at 90.267 kb on + strand at 90.279 kb on + strand at 90.279 kb on + strand at 90.279 kb on + strand at 90.390 kb on + strand, within Psyr_0084 at 90.391 kb on - strand, within Psyr_0084 at 90.424 kb on - strand, within Psyr_0084 at 90.463 kb on - strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.728 kb on + strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.729 kb on - strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.732 kb on + strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.733 kb on - strand, within Psyr_0084 at 90.927 kb on + strand, within Psyr_0084 at 90.927 kb on + strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 90.928 kb on - strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.152 kb on + strand, within Psyr_0084 at 91.153 kb on - strand, within Psyr_0084 at 91.161 kb on + strand, within Psyr_0084 at 91.161 kb on + strand, within Psyr_0084 at 91.162 kb on - strand, within Psyr_0084 at 91.162 kb on - strand, within Psyr_0084 at 91.183 kb on - strand at 91.183 kb on - strand at 91.183 kb on - strand at 91.183 kb on - strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.276 kb on + strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.277 kb on - strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.296 kb on + strand at 91.297 kb on - strand at 91.297 kb on - strand at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.589 kb on + strand, within Psyr_0085 at 91.590 kb on - strand at 91.590 kb on - strand at 91.590 kb on - strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.593 kb on + strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.594 kb on - strand at 91.613 kb on + strand at 91.613 kb on + strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.614 kb on - strand at 91.662 kb on + strand at 91.678 kb on + strand at 91.681 kb on + strand at 91.681 kb on + strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.682 kb on - strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.809 kb on + strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.810 kb on - strand at 91.902 kb on - strand at 91.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 89,329 + -2.6 89,329 + -0.4 89,329 + +0.2 89,329 + +0.4 89,330 - -1.3 89,330 - +0.8 89,330 - -1.1 89,450 + Psyr_0083 0.12 +4.2 89,450 + Psyr_0083 0.12 -0.6 89,451 - Psyr_0083 0.12 +1.4 89,451 - Psyr_0083 0.12 +1.6 89,819 + Psyr_0083 0.57 -1.0 89,819 + Psyr_0083 0.57 -0.6 89,820 - Psyr_0083 0.57 -1.1 89,913 - Psyr_0083 0.68 +0.4 89,970 - Psyr_0083 0.75 +0.2 90,064 + Psyr_0083 0.87 +1.4 90,064 + Psyr_0083 0.87 +0.0 90,064 + Psyr_0083 0.87 +0.0 90,064 + Psyr_0083 0.87 +0.0 90,064 + Psyr_0083 0.87 +0.3 90,064 + Psyr_0083 0.87 -0.1 90,064 + Psyr_0083 0.87 -0.4 90,064 + Psyr_0083 0.87 -0.3 90,064 + Psyr_0083 0.87 +0.8 90,064 + Psyr_0083 0.87 -1.1 90,065 - Psyr_0083 0.87 +1.4 90,065 - Psyr_0083 0.87 -1.3 90,065 - Psyr_0083 0.87 -1.1 90,065 - Psyr_0083 0.87 -0.5 90,065 - Psyr_0083 0.87 +0.2 90,065 - Psyr_0083 0.87 +0.5 90,065 - Psyr_0083 0.87 +0.1 90,085 + Psyr_0083 0.89 +1.8 90,085 + Psyr_0083 0.89 +0.7 90,088 + Psyr_0083 0.90 +1.0 90,088 + Psyr_0083 0.90 +0.5 90,089 - -0.4 90,107 + +0.9 90,107 + -0.2 90,107 + -0.9 90,108 - -0.5 90,108 - -0.4 90,108 - +1.8 90,108 - +1.2 90,119 + -0.2 90,119 + -0.5 90,159 + +0.8 90,160 - -1.2 90,171 + -0.6 90,171 + -2.5 90,172 - +0.4 90,172 - -0.6 90,172 - +1.2 90,172 - -1.5 90,267 + -0.4 90,279 + -0.6 90,279 + +0.2 90,279 + +0.7 90,390 + Psyr_0084 0.12 -0.7 90,391 - Psyr_0084 0.12 -1.0 90,424 - Psyr_0084 0.16 -0.1 90,463 - Psyr_0084 0.19 -0.2 90,728 + Psyr_0084 0.46 -1.0 90,728 + Psyr_0084 0.46 -0.1 90,728 + Psyr_0084 0.46 -0.8 90,728 + Psyr_0084 0.46 -0.4 90,728 + Psyr_0084 0.46 -1.3 90,729 - Psyr_0084 0.46 -1.6 90,729 - Psyr_0084 0.46 -0.5 90,729 - Psyr_0084 0.46 -0.4 90,729 - Psyr_0084 0.46 -1.1 90,729 - Psyr_0084 0.46 -0.0 90,729 - Psyr_0084 0.46 -0.5 90,729 - Psyr_0084 0.46 -0.8 90,729 - Psyr_0084 0.46 -0.2 90,729 - Psyr_0084 0.46 +1.0 90,732 + Psyr_0084 0.46 -0.0 90,732 + Psyr_0084 0.46 -2.1 90,732 + Psyr_0084 0.46 +0.9 90,732 + Psyr_0084 0.46 +0.6 90,732 + Psyr_0084 0.46 -0.6 90,733 - Psyr_0084 0.46 -0.6 90,733 - Psyr_0084 0.46 +0.4 90,733 - Psyr_0084 0.46 +0.0 90,733 - Psyr_0084 0.46 -1.0 90,733 - Psyr_0084 0.46 -1.9 90,733 - Psyr_0084 0.46 +1.4 90,927 + Psyr_0084 0.65 +0.6 90,927 + Psyr_0084 0.65 +1.4 90,928 - Psyr_0084 0.65 +0.7 90,928 - Psyr_0084 0.65 -0.6 90,928 - Psyr_0084 0.65 +0.9 90,928 - Psyr_0084 0.65 -0.5 90,928 - Psyr_0084 0.65 -0.2 90,928 - Psyr_0084 0.65 -0.9 91,152 + Psyr_0084 0.88 +2.4 91,152 + Psyr_0084 0.88 +1.1 91,152 + Psyr_0084 0.88 +0.0 91,152 + Psyr_0084 0.88 -0.7 91,152 + Psyr_0084 0.88 -1.6 91,152 + Psyr_0084 0.88 -1.2 91,153 - Psyr_0084 0.88 +0.7 91,161 + Psyr_0084 0.89 +2.4 91,161 + Psyr_0084 0.89 -2.1 91,162 - Psyr_0084 0.89 +0.4 91,162 - Psyr_0084 0.89 +2.5 91,183 - -2.5 91,183 - +0.6 91,183 - +0.0 91,183 - +0.1 91,276 + +0.1 91,276 + +0.1 91,276 + -1.5 91,276 + +0.5 91,276 + -0.2 91,276 + -1.8 91,276 + -0.5 91,276 + -1.1 91,276 + +0.6 91,276 + +1.2 91,276 + +2.2 91,276 + +0.5 91,276 + +0.9 91,277 - +1.7 91,277 - +0.5 91,277 - -0.6 91,277 - +0.5 91,277 - +0.4 91,277 - +0.8 91,277 - -0.2 91,277 - +2.2 91,277 - +0.2 91,277 - -0.4 91,277 - +0.8 91,277 - -0.3 91,296 + +0.8 91,296 + -0.6 91,296 + -0.9 91,296 + -1.0 91,296 + -1.6 91,297 - -0.2 91,297 - -0.4 91,589 + Psyr_0085 0.89 +0.5 91,589 + Psyr_0085 0.89 -1.2 91,589 + Psyr_0085 0.89 -0.5 91,589 + Psyr_0085 0.89 -0.4 91,589 + Psyr_0085 0.89 -0.9 91,589 + Psyr_0085 0.89 -1.8 91,589 + Psyr_0085 0.89 -0.5 91,589 + Psyr_0085 0.89 -0.9 91,589 + Psyr_0085 0.89 -2.0 91,589 + Psyr_0085 0.89 +1.9 91,590 - +0.6 91,590 - -1.6 91,590 - -0.4 91,593 + -0.6 91,593 + -1.0 91,593 + -2.3 91,593 + -0.8 91,593 + +1.4 91,593 + -0.5 91,594 - +0.7 91,594 - +0.4 91,594 - +1.1 91,594 - -0.2 91,594 - -0.2 91,613 + -0.1 91,613 + +0.2 91,614 - +0.4 91,614 - -0.2 91,614 - -0.0 91,614 - -0.4 91,662 + +4.2 91,678 + -0.0 91,681 + -0.3 91,681 + -0.9 91,682 - -0.3 91,682 - +0.5 91,682 - -0.2 91,682 - -1.1 91,682 - +1.0 91,682 - -0.1 91,682 - -1.5 91,682 - +0.3 91,809 + -0.2 91,809 + -0.6 91,809 + -1.0 91,809 + -1.8 91,809 + -0.3 91,809 + -2.3 91,809 + +1.4 91,810 - +0.4 91,810 - +0.8 91,810 - +0.8 91,810 - +0.8 91,810 - -0.7 91,810 - +0.0 91,902 - +0.1 91,902 - -1.1
Or see this region's nucleotide sequence