Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0049 and Psyr_0050 are separated by 156 nucleotides Psyr_0050 and Psyr_0051 are separated by 67 nucleotides Psyr_0051 and Psyr_0052 are separated by 16 nucleotides
Psyr_0049: Psyr_0049 - Cytochrome c, class I:Iron permease FTR1, at 49,110 to 51,008
_0049
Psyr_0050: Psyr_0050 - Lysine exporter protein (LYSE/YGGA), at 51,165 to 51,797
_0050
Psyr_0051: Psyr_0051 - conserved hypothetical protein, at 51,865 to 52,458
_0051
Psyr_0052: Psyr_0052 - ABC transporter, at 52,475 to 54,385
_0052
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 50.890 kb on + strand at 50.977 kb on - strand at 51.010 kb on - strand at 51.010 kb on - strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.063 kb on + strand at 51.064 kb on - strand at 51.064 kb on - strand at 51.100 kb on + strand at 51.101 kb on - strand at 51.299 kb on - strand, within Psyr_0050 at 51.299 kb on - strand, within Psyr_0050 at 51.434 kb on + strand, within Psyr_0050 at 51.434 kb on + strand, within Psyr_0050 at 51.456 kb on + strand, within Psyr_0050 at 51.456 kb on + strand, within Psyr_0050 at 51.457 kb on - strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.544 kb on + strand, within Psyr_0050 at 51.553 kb on + strand, within Psyr_0050 at 51.553 kb on + strand, within Psyr_0050 at 51.554 kb on - strand, within Psyr_0050 at 51.752 kb on + strand at 51.753 kb on - strand at 51.833 kb on + strand at 51.833 kb on + strand at 51.866 kb on + strand at 51.866 kb on + strand at 51.867 kb on - strand at 52.366 kb on + strand, within Psyr_0051 at 52.366 kb on + strand, within Psyr_0051 at 52.366 kb on + strand, within Psyr_0051 at 52.367 kb on - strand, within Psyr_0051 at 52.370 kb on + strand, within Psyr_0051 at 52.370 kb on + strand, within Psyr_0051 at 52.371 kb on - strand, within Psyr_0051 at 52.371 kb on - strand, within Psyr_0051 at 52.620 kb on + strand at 52.620 kb on + strand at 52.620 kb on + strand at 52.620 kb on + strand at 52.620 kb on + strand at 52.620 kb on + strand at 52.621 kb on - strand at 52.621 kb on - strand at 52.621 kb on - strand at 52.842 kb on + strand, within Psyr_0052 at 52.842 kb on + strand, within Psyr_0052 at 52.842 kb on + strand, within Psyr_0052 at 52.843 kb on - strand, within Psyr_0052 at 53.251 kb on - strand, within Psyr_0052 at 53.251 kb on - strand, within Psyr_0052
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 50,890 + -0.2 50,977 - +0.0 51,010 - +0.9 51,010 - +4.9 51,063 + +0.6 51,063 + +2.4 51,063 + -0.5 51,063 + +0.9 51,064 - -1.1 51,064 - +0.5 51,100 + -1.1 51,101 - +0.3 51,299 - Psyr_0050 0.21 -0.1 51,299 - Psyr_0050 0.21 +0.4 51,434 + Psyr_0050 0.42 +1.6 51,434 + Psyr_0050 0.42 -0.1 51,456 + Psyr_0050 0.46 +0.2 51,456 + Psyr_0050 0.46 -1.6 51,457 - Psyr_0050 0.46 -0.9 51,544 + Psyr_0050 0.60 -0.2 51,544 + Psyr_0050 0.60 -0.1 51,544 + Psyr_0050 0.60 -0.4 51,553 + Psyr_0050 0.61 +0.7 51,553 + Psyr_0050 0.61 -1.7 51,554 - Psyr_0050 0.61 -0.2 51,752 + -0.2 51,753 - -0.6 51,833 + -1.2 51,833 + +0.0 51,866 + -0.2 51,866 + -2.1 51,867 - +0.4 52,366 + Psyr_0051 0.84 -0.7 52,366 + Psyr_0051 0.84 +0.6 52,366 + Psyr_0051 0.84 -0.9 52,367 - Psyr_0051 0.85 -0.2 52,370 + Psyr_0051 0.85 -0.7 52,370 + Psyr_0051 0.85 +0.5 52,371 - Psyr_0051 0.85 -0.3 52,371 - Psyr_0051 0.85 -0.9 52,620 + +0.8 52,620 + +0.7 52,620 + -2.4 52,620 + +0.1 52,620 + +1.2 52,620 + -0.9 52,621 - -0.2 52,621 - -0.4 52,621 - +0.0 52,842 + Psyr_0052 0.19 +0.0 52,842 + Psyr_0052 0.19 +1.0 52,842 + Psyr_0052 0.19 +0.8 52,843 - Psyr_0052 0.19 +0.9 53,251 - Psyr_0052 0.41 +0.5 53,251 - Psyr_0052 0.41 +0.5
Or see this region's nucleotide sequence