Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0039 and Psyr_0040 are separated by 212 nucleotides Psyr_0040 and Psyr_0041 are separated by 118 nucleotides Psyr_0041 and Psyr_0042 are separated by 0 nucleotides Psyr_0042 and Psyr_0043 are separated by 33 nucleotides
Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485
_0039
Psyr_0040: Psyr_0040 - OsmC-like protein, at 42,698 to 43,129
_0040
Psyr_0041: Psyr_0041 - Protein of unknown function DUF1161, at 43,248 to 43,481
_0041
Psyr_0042: Psyr_0042 - lipoprotein, putative, at 43,482 to 43,970
_0042
Psyr_0043: Psyr_0043 - conserved hypothetical protein, at 44,004 to 45,059
_0043
Position (kb)
43
44 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 42.659 kb on + strand at 42.660 kb on - strand at 42.798 kb on - strand, within Psyr_0040 at 42.798 kb on - strand, within Psyr_0040 at 42.935 kb on - strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.963 kb on + strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 42.964 kb on - strand, within Psyr_0040 at 43.114 kb on + strand at 43.114 kb on + strand at 43.114 kb on + strand at 43.114 kb on + strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.115 kb on - strand at 43.169 kb on + strand at 43.169 kb on + strand at 43.170 kb on - strand at 43.170 kb on - strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.178 kb on + strand at 43.179 kb on - strand at 43.179 kb on - strand at 43.179 kb on - strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.180 kb on + strand at 43.181 kb on - strand at 43.181 kb on - strand at 43.181 kb on - strand at 43.230 kb on + strand at 43.230 kb on + strand at 43.260 kb on - strand at 43.374 kb on + strand, within Psyr_0041 at 43.374 kb on + strand, within Psyr_0041 at 43.375 kb on - strand, within Psyr_0041 at 43.394 kb on + strand, within Psyr_0041 at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.544 kb on - strand, within Psyr_0042 at 43.578 kb on + strand, within Psyr_0042 at 43.591 kb on + strand, within Psyr_0042 at 43.591 kb on + strand, within Psyr_0042 at 43.591 kb on + strand, within Psyr_0042 at 43.591 kb on + strand, within Psyr_0042 at 43.591 kb on + strand, within Psyr_0042 at 43.592 kb on - strand, within Psyr_0042 at 43.592 kb on - strand, within Psyr_0042 at 43.633 kb on + strand, within Psyr_0042 at 43.634 kb on - strand, within Psyr_0042 at 43.634 kb on - strand, within Psyr_0042 at 43.651 kb on + strand, within Psyr_0042 at 43.651 kb on + strand, within Psyr_0042 at 43.693 kb on + strand, within Psyr_0042 at 43.693 kb on + strand, within Psyr_0042 at 43.693 kb on + strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.694 kb on - strand, within Psyr_0042 at 43.699 kb on + strand, within Psyr_0042 at 43.699 kb on + strand, within Psyr_0042 at 43.704 kb on + strand, within Psyr_0042 at 43.704 kb on + strand, within Psyr_0042 at 43.704 kb on + strand, within Psyr_0042 at 43.704 kb on + strand, within Psyr_0042 at 43.704 kb on + strand, within Psyr_0042 at 43.705 kb on - strand, within Psyr_0042 at 43.705 kb on - strand, within Psyr_0042 at 43.705 kb on - strand, within Psyr_0042 at 43.705 kb on - strand, within Psyr_0042 at 43.705 kb on - strand, within Psyr_0042 at 43.741 kb on + strand, within Psyr_0042 at 43.741 kb on + strand, within Psyr_0042 at 43.753 kb on + strand, within Psyr_0042 at 43.753 kb on + strand, within Psyr_0042 at 43.753 kb on + strand, within Psyr_0042 at 43.753 kb on + strand, within Psyr_0042 at 43.753 kb on + strand, within Psyr_0042 at 43.754 kb on - strand, within Psyr_0042 at 43.754 kb on - strand, within Psyr_0042 at 43.878 kb on + strand, within Psyr_0042 at 43.878 kb on + strand, within Psyr_0042 at 43.878 kb on + strand, within Psyr_0042 at 43.878 kb on + strand, within Psyr_0042 at 43.879 kb on - strand, within Psyr_0042 at 43.879 kb on - strand, within Psyr_0042 at 43.879 kb on - strand, within Psyr_0042 at 43.879 kb on - strand, within Psyr_0042 at 43.879 kb on - strand, within Psyr_0042 at 43.942 kb on + strand at 43.966 kb on - strand at 43.966 kb on - strand at 43.984 kb on + strand at 43.984 kb on + strand at 44.088 kb on + strand at 44.088 kb on + strand at 44.088 kb on + strand at 44.091 kb on + strand at 44.092 kb on - strand at 44.092 kb on - strand at 44.268 kb on + strand, within Psyr_0043 at 44.269 kb on - strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.289 kb on + strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.290 kb on - strand, within Psyr_0043 at 44.383 kb on - strand, within Psyr_0043 at 44.385 kb on + strand, within Psyr_0043 at 44.385 kb on + strand, within Psyr_0043 at 44.386 kb on - strand, within Psyr_0043 at 44.445 kb on + strand, within Psyr_0043 at 44.445 kb on + strand, within Psyr_0043 at 44.445 kb on + strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.446 kb on - strand, within Psyr_0043 at 44.466 kb on + strand, within Psyr_0043
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 42,659 + -0.6 42,660 - -1.5 42,798 - Psyr_0040 0.23 -0.6 42,798 - Psyr_0040 0.23 -1.5 42,935 - Psyr_0040 0.55 -1.3 42,963 + Psyr_0040 0.61 -0.3 42,963 + Psyr_0040 0.61 -1.2 42,963 + Psyr_0040 0.61 -0.6 42,963 + Psyr_0040 0.61 -1.1 42,963 + Psyr_0040 0.61 +0.1 42,963 + Psyr_0040 0.61 -0.5 42,963 + Psyr_0040 0.61 -0.3 42,964 - Psyr_0040 0.62 -0.4 42,964 - Psyr_0040 0.62 +1.5 42,964 - Psyr_0040 0.62 +0.8 43,114 + +0.6 43,114 + -0.3 43,114 + +1.2 43,114 + +0.4 43,115 - -1.0 43,115 - -2.3 43,115 - +0.7 43,115 - -0.8 43,115 - +0.3 43,115 - -1.2 43,169 + -0.7 43,169 + +0.9 43,170 - +0.3 43,170 - -0.5 43,178 + -1.9 43,178 + -1.0 43,178 + +0.8 43,178 + -0.5 43,178 + +0.3 43,178 + +0.0 43,178 + +1.6 43,179 - +1.4 43,179 - -0.8 43,179 - -0.4 43,180 + -0.1 43,180 + +0.2 43,180 + +0.6 43,180 + +0.8 43,181 - +0.0 43,181 - -0.7 43,181 - -1.7 43,230 + +0.3 43,230 + +0.5 43,260 - -0.5 43,374 + Psyr_0041 0.54 -1.1 43,374 + Psyr_0041 0.54 -1.3 43,375 - Psyr_0041 0.54 -1.4 43,394 + Psyr_0041 0.62 -0.8 43,461 + +0.8 43,461 + -0.1 43,461 + +0.7 43,461 + -0.3 43,461 + +0.8 43,461 + +1.3 43,461 + +0.8 43,461 + +0.3 43,461 + +0.4 43,461 + -0.9 43,462 - -0.9 43,462 - -0.7 43,462 - -0.1 43,462 - +1.9 43,462 - -0.0 43,462 - +0.2 43,544 - Psyr_0042 0.13 +0.1 43,578 + Psyr_0042 0.20 -0.7 43,591 + Psyr_0042 0.22 +0.1 43,591 + Psyr_0042 0.22 +1.0 43,591 + Psyr_0042 0.22 +1.1 43,591 + Psyr_0042 0.22 -0.0 43,591 + Psyr_0042 0.22 -0.1 43,592 - Psyr_0042 0.22 +0.2 43,592 - Psyr_0042 0.22 -0.6 43,633 + Psyr_0042 0.31 +1.2 43,634 - Psyr_0042 0.31 +0.3 43,634 - Psyr_0042 0.31 -0.2 43,651 + Psyr_0042 0.35 -0.4 43,651 + Psyr_0042 0.35 +0.1 43,693 + Psyr_0042 0.43 -2.4 43,693 + Psyr_0042 0.43 -0.0 43,693 + Psyr_0042 0.43 +1.4 43,694 - Psyr_0042 0.43 -0.2 43,694 - Psyr_0042 0.43 -0.9 43,694 - Psyr_0042 0.43 -1.1 43,694 - Psyr_0042 0.43 -0.1 43,694 - Psyr_0042 0.43 -0.0 43,694 - Psyr_0042 0.43 +0.7 43,694 - Psyr_0042 0.43 -1.3 43,699 + Psyr_0042 0.44 -0.1 43,699 + Psyr_0042 0.44 +0.9 43,704 + Psyr_0042 0.45 -0.4 43,704 + Psyr_0042 0.45 +0.7 43,704 + Psyr_0042 0.45 +3.7 43,704 + Psyr_0042 0.45 +0.6 43,704 + Psyr_0042 0.45 -0.5 43,705 - Psyr_0042 0.46 +0.0 43,705 - Psyr_0042 0.46 +1.5 43,705 - Psyr_0042 0.46 +1.0 43,705 - Psyr_0042 0.46 +1.8 43,705 - Psyr_0042 0.46 -0.2 43,741 + Psyr_0042 0.53 -1.0 43,741 + Psyr_0042 0.53 -1.0 43,753 + Psyr_0042 0.55 -2.5 43,753 + Psyr_0042 0.55 +1.8 43,753 + Psyr_0042 0.55 -3.5 43,753 + Psyr_0042 0.55 -0.1 43,753 + Psyr_0042 0.55 -1.0 43,754 - Psyr_0042 0.56 -0.6 43,754 - Psyr_0042 0.56 -0.2 43,878 + Psyr_0042 0.81 -0.7 43,878 + Psyr_0042 0.81 -1.0 43,878 + Psyr_0042 0.81 +0.3 43,878 + Psyr_0042 0.81 +0.1 43,879 - Psyr_0042 0.81 -0.3 43,879 - Psyr_0042 0.81 -0.2 43,879 - Psyr_0042 0.81 +0.1 43,879 - Psyr_0042 0.81 +1.1 43,879 - Psyr_0042 0.81 -0.3 43,942 + +1.0 43,966 - -0.0 43,966 - +0.6 43,984 + +0.5 43,984 + -0.1 44,088 + -1.2 44,088 + +1.6 44,088 + -1.2 44,091 + -0.6 44,092 - +0.6 44,092 - +2.4 44,268 + Psyr_0043 0.25 +0.1 44,269 - Psyr_0043 0.25 +0.6 44,289 + Psyr_0043 0.27 +1.4 44,289 + Psyr_0043 0.27 +1.2 44,289 + Psyr_0043 0.27 -1.9 44,289 + Psyr_0043 0.27 -0.5 44,289 + Psyr_0043 0.27 +0.8 44,289 + Psyr_0043 0.27 +0.0 44,290 - Psyr_0043 0.27 -0.1 44,290 - Psyr_0043 0.27 +0.8 44,290 - Psyr_0043 0.27 +0.8 44,290 - Psyr_0043 0.27 +1.0 44,290 - Psyr_0043 0.27 -0.9 44,290 - Psyr_0043 0.27 +0.0 44,383 - Psyr_0043 0.36 +1.6 44,385 + Psyr_0043 0.36 +3.4 44,385 + Psyr_0043 0.36 -1.9 44,386 - Psyr_0043 0.36 +0.4 44,445 + Psyr_0043 0.42 -1.7 44,445 + Psyr_0043 0.42 -0.8 44,445 + Psyr_0043 0.42 +1.0 44,446 - Psyr_0043 0.42 -0.7 44,446 - Psyr_0043 0.42 +1.0 44,446 - Psyr_0043 0.42 -1.6 44,446 - Psyr_0043 0.42 +0.2 44,446 - Psyr_0043 0.42 -0.4 44,446 - Psyr_0043 0.42 +1.5 44,446 - Psyr_0043 0.42 +0.9 44,446 - Psyr_0043 0.42 +0.0 44,466 + Psyr_0043 0.44 +0.4
Or see this region's nucleotide sequence