Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5014

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5013 and Psyr_5014 are separated by 12 nucleotidesPsyr_5014 and Psyr_5015 are separated by 81 nucleotides Psyr_5013: Psyr_5013 - L-carnitine dehydratase/bile acid-inducible protein F, at 5,953,777 to 5,954,997 _5013 Psyr_5014: Psyr_5014 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal, at 5,955,010 to 5,956,191 _5014 Psyr_5015: Psyr_5015 - transcriptional regulator, LysR family, at 5,956,273 to 5,957,259 _5015 Position (kb) 5955 5956 5957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5954.139 kb on + strand, within Psyr_5013at 5954.139 kb on + strand, within Psyr_5013at 5954.139 kb on + strand, within Psyr_5013at 5954.139 kb on + strand, within Psyr_5013at 5954.140 kb on - strand, within Psyr_5013at 5954.265 kb on - strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.324 kb on + strand, within Psyr_5013at 5954.325 kb on - strand, within Psyr_5013at 5954.325 kb on - strand, within Psyr_5013at 5954.353 kb on + strand, within Psyr_5013at 5954.353 kb on + strand, within Psyr_5013at 5954.354 kb on - strand, within Psyr_5013at 5954.354 kb on - strand, within Psyr_5013at 5954.354 kb on - strand, within Psyr_5013at 5954.354 kb on - strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.359 kb on + strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.360 kb on - strand, within Psyr_5013at 5954.376 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.384 kb on + strand, within Psyr_5013at 5954.445 kb on - strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.618 kb on + strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.619 kb on - strand, within Psyr_5013at 5954.654 kb on + strand, within Psyr_5013at 5954.654 kb on + strand, within Psyr_5013at 5954.655 kb on - strand, within Psyr_5013at 5954.757 kb on + strand, within Psyr_5013at 5954.801 kb on + strand, within Psyr_5013at 5954.801 kb on + strand, within Psyr_5013at 5954.801 kb on + strand, within Psyr_5013at 5954.801 kb on + strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.802 kb on - strand, within Psyr_5013at 5954.804 kb on + strand, within Psyr_5013at 5954.804 kb on + strand, within Psyr_5013at 5954.804 kb on + strand, within Psyr_5013at 5954.805 kb on - strand, within Psyr_5013at 5955.011 kb on + strandat 5955.011 kb on + strandat 5955.012 kb on - strandat 5955.012 kb on - strandat 5955.012 kb on - strandat 5955.014 kb on + strandat 5955.014 kb on + strandat 5955.014 kb on + strandat 5955.015 kb on - strandat 5955.015 kb on - strandat 5955.015 kb on - strandat 5955.080 kb on + strandat 5955.080 kb on + strandat 5955.080 kb on + strandat 5955.080 kb on + strandat 5955.081 kb on - strandat 5955.084 kb on + strandat 5955.084 kb on + strandat 5955.084 kb on + strandat 5955.085 kb on - strandat 5955.085 kb on - strandat 5955.085 kb on - strandat 5955.085 kb on - strandat 5955.374 kb on + strand, within Psyr_5014at 5955.374 kb on + strand, within Psyr_5014at 5955.374 kb on + strand, within Psyr_5014at 5955.375 kb on - strand, within Psyr_5014at 5955.375 kb on - strand, within Psyr_5014at 5955.375 kb on - strand, within Psyr_5014at 5955.649 kb on + strand, within Psyr_5014at 5955.649 kb on + strand, within Psyr_5014at 5955.650 kb on - strand, within Psyr_5014at 5955.650 kb on - strand, within Psyr_5014at 5955.650 kb on - strand, within Psyr_5014at 5955.821 kb on + strand, within Psyr_5014at 5955.821 kb on + strand, within Psyr_5014at 5955.821 kb on + strand, within Psyr_5014at 5955.821 kb on + strand, within Psyr_5014at 5955.821 kb on + strand, within Psyr_5014at 5955.822 kb on - strand, within Psyr_5014at 5955.822 kb on - strand, within Psyr_5014at 5955.822 kb on - strand, within Psyr_5014at 5955.822 kb on - strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.953 kb on + strand, within Psyr_5014at 5955.954 kb on - strand, within Psyr_5014at 5955.954 kb on - strand, within Psyr_5014at 5955.954 kb on - strand, within Psyr_5014at 5955.954 kb on - strand, within Psyr_5014at 5956.231 kb on + strandat 5956.232 kb on - strandat 5956.232 kb on - strandat 5956.232 kb on - strandat 5956.266 kb on - strandat 5956.359 kb on - strandat 5956.549 kb on + strand, within Psyr_5015at 5956.549 kb on + strand, within Psyr_5015at 5956.549 kb on + strand, within Psyr_5015at 5956.549 kb on + strand, within Psyr_5015at 5956.549 kb on + strand, within Psyr_5015at 5956.549 kb on + strand, within Psyr_5015at 5956.550 kb on - strand, within Psyr_5015at 5956.550 kb on - strand, within Psyr_5015at 5956.550 kb on - strand, within Psyr_5015at 5956.550 kb on - strand, within Psyr_5015at 5956.551 kb on + strand, within Psyr_5015at 5956.551 kb on + strand, within Psyr_5015at 5956.551 kb on + strand, within Psyr_5015at 5956.552 kb on - strand, within Psyr_5015at 5956.780 kb on + strand, within Psyr_5015at 5956.780 kb on + strand, within Psyr_5015at 5956.781 kb on - strand, within Psyr_5015at 5956.781 kb on - strand, within Psyr_5015at 5956.781 kb on - strand, within Psyr_5015at 5956.781 kb on - strand, within Psyr_5015at 5956.976 kb on + strand, within Psyr_5015at 5957.002 kb on + strand, within Psyr_5015at 5957.002 kb on + strand, within Psyr_5015at 5957.136 kb on + strand, within Psyr_5015at 5957.142 kb on + strand, within Psyr_5015at 5957.149 kb on + strand, within Psyr_5015at 5957.149 kb on + strand, within Psyr_5015at 5957.149 kb on + strand, within Psyr_5015at 5957.149 kb on + strand, within Psyr_5015at 5957.150 kb on - strand, within Psyr_5015at 5957.150 kb on - strand, within Psyr_5015at 5957.150 kb on - strand, within Psyr_5015at 5957.150 kb on - strand, within Psyr_5015at 5957.150 kb on - strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.152 kb on + strand, within Psyr_5015at 5957.153 kb on - strand, within Psyr_5015

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,954,139 + Psyr_5013 0.30 -0.3
5,954,139 + Psyr_5013 0.30 -2.5
5,954,139 + Psyr_5013 0.30 -0.0
5,954,139 + Psyr_5013 0.30 +1.0
5,954,140 - Psyr_5013 0.30 -1.3
5,954,265 - Psyr_5013 0.40 -0.5
5,954,324 + Psyr_5013 0.45 -0.7
5,954,324 + Psyr_5013 0.45 -0.1
5,954,324 + Psyr_5013 0.45 +4.1
5,954,324 + Psyr_5013 0.45 -0.2
5,954,324 + Psyr_5013 0.45 -0.7
5,954,324 + Psyr_5013 0.45 +0.5
5,954,324 + Psyr_5013 0.45 -0.1
5,954,325 - Psyr_5013 0.45 -1.1
5,954,325 - Psyr_5013 0.45 -1.4
5,954,353 + Psyr_5013 0.47 +1.3
5,954,353 + Psyr_5013 0.47 -0.5
5,954,354 - Psyr_5013 0.47 -0.5
5,954,354 - Psyr_5013 0.47 +0.3
5,954,354 - Psyr_5013 0.47 +0.5
5,954,354 - Psyr_5013 0.47 +0.7
5,954,359 + Psyr_5013 0.48 -0.8
5,954,359 + Psyr_5013 0.48 +0.3
5,954,359 + Psyr_5013 0.48 -0.0
5,954,359 + Psyr_5013 0.48 +1.5
5,954,359 + Psyr_5013 0.48 +0.2
5,954,359 + Psyr_5013 0.48 -1.2
5,954,359 + Psyr_5013 0.48 -0.1
5,954,359 + Psyr_5013 0.48 -0.9
5,954,359 + Psyr_5013 0.48 +0.6
5,954,359 + Psyr_5013 0.48 +0.4
5,954,359 + Psyr_5013 0.48 +0.8
5,954,359 + Psyr_5013 0.48 +0.1
5,954,360 - Psyr_5013 0.48 -1.1
5,954,360 - Psyr_5013 0.48 +0.4
5,954,360 - Psyr_5013 0.48 -0.2
5,954,360 - Psyr_5013 0.48 -0.7
5,954,360 - Psyr_5013 0.48 +0.1
5,954,360 - Psyr_5013 0.48 -0.6
5,954,360 - Psyr_5013 0.48 -2.2
5,954,376 + Psyr_5013 0.49 +0.3
5,954,384 + Psyr_5013 0.50 -0.6
5,954,384 + Psyr_5013 0.50 +0.3
5,954,384 + Psyr_5013 0.50 +1.8
5,954,384 + Psyr_5013 0.50 -0.1
5,954,384 + Psyr_5013 0.50 +1.9
5,954,384 + Psyr_5013 0.50 +0.5
5,954,445 - Psyr_5013 0.55 -1.7
5,954,618 + Psyr_5013 0.69 -2.1
5,954,618 + Psyr_5013 0.69 +0.1
5,954,618 + Psyr_5013 0.69 -0.6
5,954,618 + Psyr_5013 0.69 -0.7
5,954,618 + Psyr_5013 0.69 -0.1
5,954,618 + Psyr_5013 0.69 -0.9
5,954,618 + Psyr_5013 0.69 +0.3
5,954,618 + Psyr_5013 0.69 +0.3
5,954,619 - Psyr_5013 0.69 -3.0
5,954,619 - Psyr_5013 0.69 -0.2
5,954,619 - Psyr_5013 0.69 +0.5
5,954,619 - Psyr_5013 0.69 -0.7
5,954,619 - Psyr_5013 0.69 +0.3
5,954,619 - Psyr_5013 0.69 +1.4
5,954,619 - Psyr_5013 0.69 -2.5
5,954,654 + Psyr_5013 0.72 -0.1
5,954,654 + Psyr_5013 0.72 -1.7
5,954,655 - Psyr_5013 0.72 -0.7
5,954,757 + Psyr_5013 0.80 -0.8
5,954,801 + Psyr_5013 0.84 -1.3
5,954,801 + Psyr_5013 0.84 +1.6
5,954,801 + Psyr_5013 0.84 -1.3
5,954,801 + Psyr_5013 0.84 -0.4
5,954,802 - Psyr_5013 0.84 -0.8
5,954,802 - Psyr_5013 0.84 -0.1
5,954,802 - Psyr_5013 0.84 -3.4
5,954,802 - Psyr_5013 0.84 +1.5
5,954,802 - Psyr_5013 0.84 -0.2
5,954,802 - Psyr_5013 0.84 -1.1
5,954,802 - Psyr_5013 0.84 +0.5
5,954,804 + Psyr_5013 0.84 +0.4
5,954,804 + Psyr_5013 0.84 +0.4
5,954,804 + Psyr_5013 0.84 +1.3
5,954,805 - Psyr_5013 0.84 +1.0
5,955,011 + -2.3
5,955,011 + +0.3
5,955,012 - -2.1
5,955,012 - +0.1
5,955,012 - -1.3
5,955,014 + -0.9
5,955,014 + +0.8
5,955,014 + +2.3
5,955,015 - +0.8
5,955,015 - -0.2
5,955,015 - +1.1
5,955,080 + -0.3
5,955,080 + +0.3
5,955,080 + -1.3
5,955,080 + +1.8
5,955,081 - +0.3
5,955,084 + -0.2
5,955,084 + +0.4
5,955,084 + +0.3
5,955,085 - -0.3
5,955,085 - +0.1
5,955,085 - +1.3
5,955,085 - +0.3
5,955,374 + Psyr_5014 0.31 -0.4
5,955,374 + Psyr_5014 0.31 +0.4
5,955,374 + Psyr_5014 0.31 -1.1
5,955,375 - Psyr_5014 0.31 +1.3
5,955,375 - Psyr_5014 0.31 +0.3
5,955,375 - Psyr_5014 0.31 -0.6
5,955,649 + Psyr_5014 0.54 +1.0
5,955,649 + Psyr_5014 0.54 +0.8
5,955,650 - Psyr_5014 0.54 +0.7
5,955,650 - Psyr_5014 0.54 -0.3
5,955,650 - Psyr_5014 0.54 -0.1
5,955,821 + Psyr_5014 0.69 -0.7
5,955,821 + Psyr_5014 0.69 +0.7
5,955,821 + Psyr_5014 0.69 -0.6
5,955,821 + Psyr_5014 0.69 +3.1
5,955,821 + Psyr_5014 0.69 +1.1
5,955,822 - Psyr_5014 0.69 +0.8
5,955,822 - Psyr_5014 0.69 +0.8
5,955,822 - Psyr_5014 0.69 +0.4
5,955,822 - Psyr_5014 0.69 -0.6
5,955,953 + Psyr_5014 0.80 +0.6
5,955,953 + Psyr_5014 0.80 +1.0
5,955,953 + Psyr_5014 0.80 +0.9
5,955,953 + Psyr_5014 0.80 +0.6
5,955,953 + Psyr_5014 0.80 +1.1
5,955,953 + Psyr_5014 0.80 +1.0
5,955,954 - Psyr_5014 0.80 -0.1
5,955,954 - Psyr_5014 0.80 +0.5
5,955,954 - Psyr_5014 0.80 +0.0
5,955,954 - Psyr_5014 0.80 +0.3
5,956,231 + +0.1
5,956,232 - -0.9
5,956,232 - +0.6
5,956,232 - +0.2
5,956,266 - +0.7
5,956,359 - -0.3
5,956,549 + Psyr_5015 0.28 +0.3
5,956,549 + Psyr_5015 0.28 -1.1
5,956,549 + Psyr_5015 0.28 -0.5
5,956,549 + Psyr_5015 0.28 +0.3
5,956,549 + Psyr_5015 0.28 -0.5
5,956,549 + Psyr_5015 0.28 -0.7
5,956,550 - Psyr_5015 0.28 -0.0
5,956,550 - Psyr_5015 0.28 -1.2
5,956,550 - Psyr_5015 0.28 +3.6
5,956,550 - Psyr_5015 0.28 +0.2
5,956,551 + Psyr_5015 0.28 -0.2
5,956,551 + Psyr_5015 0.28 +0.9
5,956,551 + Psyr_5015 0.28 -1.3
5,956,552 - Psyr_5015 0.28 +0.4
5,956,780 + Psyr_5015 0.51 -0.5
5,956,780 + Psyr_5015 0.51 +2.3
5,956,781 - Psyr_5015 0.51 -1.0
5,956,781 - Psyr_5015 0.51 -0.6
5,956,781 - Psyr_5015 0.51 +2.3
5,956,781 - Psyr_5015 0.51 +1.3
5,956,976 + Psyr_5015 0.71 -0.7
5,957,002 + Psyr_5015 0.74 -0.3
5,957,002 + Psyr_5015 0.74 +1.1
5,957,136 + Psyr_5015 0.87 -1.1
5,957,142 + Psyr_5015 0.88 +0.0
5,957,149 + Psyr_5015 0.89 +0.3
5,957,149 + Psyr_5015 0.89 +0.8
5,957,149 + Psyr_5015 0.89 +1.1
5,957,149 + Psyr_5015 0.89 -1.2
5,957,150 - Psyr_5015 0.89 -0.2
5,957,150 - Psyr_5015 0.89 -1.1
5,957,150 - Psyr_5015 0.89 +0.5
5,957,150 - Psyr_5015 0.89 +1.7
5,957,150 - Psyr_5015 0.89 +1.7
5,957,152 + Psyr_5015 0.89 +0.2
5,957,152 + Psyr_5015 0.89 +0.3
5,957,152 + Psyr_5015 0.89 +0.3
5,957,152 + Psyr_5015 0.89 +0.0
5,957,152 + Psyr_5015 0.89 -1.8
5,957,152 + Psyr_5015 0.89 +0.6
5,957,152 + Psyr_5015 0.89 +3.3
5,957,153 - Psyr_5015 0.89 -1.1

Or see this region's nucleotide sequence