Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4957

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4956 and Psyr_4957 overlap by 37 nucleotidesPsyr_4957 and Psyr_4958 overlap by 4 nucleotides Psyr_4956: Psyr_4956 - protein of unknown function DUF879, at 5,873,877 to 5,875,709 _4956 Psyr_4957: Psyr_4957 - Protein of unknown function DUF1305, at 5,875,673 to 5,876,743 _4957 Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343 _4958 Position (kb) 5875 5876 5877Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5874.741 kb on + strand, within Psyr_4956at 5874.753 kb on + strand, within Psyr_4956at 5874.753 kb on + strand, within Psyr_4956at 5874.754 kb on - strand, within Psyr_4956at 5874.754 kb on - strand, within Psyr_4956at 5874.888 kb on + strand, within Psyr_4956at 5874.889 kb on - strand, within Psyr_4956at 5874.889 kb on - strand, within Psyr_4956at 5875.325 kb on + strand, within Psyr_4956at 5875.325 kb on + strand, within Psyr_4956at 5875.326 kb on - strand, within Psyr_4956at 5875.326 kb on - strand, within Psyr_4956at 5875.401 kb on + strand, within Psyr_4956at 5875.402 kb on - strand, within Psyr_4956at 5875.402 kb on - strand, within Psyr_4956at 5875.402 kb on - strand, within Psyr_4956at 5875.549 kb on - strandat 5875.549 kb on - strandat 5875.606 kb on - strandat 5875.606 kb on - strandat 5875.606 kb on - strandat 5875.606 kb on - strandat 5875.633 kb on + strandat 5875.634 kb on - strandat 5875.778 kb on + strandat 5875.778 kb on + strandat 5875.779 kb on - strandat 5875.796 kb on - strand, within Psyr_4957at 5876.001 kb on + strand, within Psyr_4957at 5876.001 kb on + strand, within Psyr_4957at 5876.002 kb on - strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.017 kb on + strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.018 kb on - strand, within Psyr_4957at 5876.105 kb on + strand, within Psyr_4957at 5876.106 kb on - strand, within Psyr_4957at 5876.106 kb on - strand, within Psyr_4957at 5876.114 kb on + strand, within Psyr_4957at 5876.115 kb on - strand, within Psyr_4957at 5876.156 kb on + strand, within Psyr_4957at 5876.156 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.246 kb on + strand, within Psyr_4957at 5876.247 kb on - strand, within Psyr_4957at 5876.247 kb on - strand, within Psyr_4957at 5876.312 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.460 kb on + strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.461 kb on - strand, within Psyr_4957at 5876.465 kb on - strand, within Psyr_4957at 5876.465 kb on - strand, within Psyr_4957at 5876.555 kb on + strand, within Psyr_4957at 5876.556 kb on - strand, within Psyr_4957at 5876.556 kb on - strand, within Psyr_4957at 5876.610 kb on + strand, within Psyr_4957at 5876.643 kb on + strandat 5876.644 kb on - strandat 5876.644 kb on - strandat 5876.644 kb on - strandat 5876.909 kb on - strandat 5877.268 kb on - strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.295 kb on + strand, within Psyr_4958at 5877.296 kb on - strand, within Psyr_4958at 5877.296 kb on - strand, within Psyr_4958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,874,741 + Psyr_4956 0.47 +0.2
5,874,753 + Psyr_4956 0.48 -2.0
5,874,753 + Psyr_4956 0.48 -1.4
5,874,754 - Psyr_4956 0.48 +1.2
5,874,754 - Psyr_4956 0.48 +1.2
5,874,888 + Psyr_4956 0.55 -0.6
5,874,889 - Psyr_4956 0.55 +1.3
5,874,889 - Psyr_4956 0.55 -0.2
5,875,325 + Psyr_4956 0.79 -0.8
5,875,325 + Psyr_4956 0.79 +0.5
5,875,326 - Psyr_4956 0.79 +0.1
5,875,326 - Psyr_4956 0.79 -1.7
5,875,401 + Psyr_4956 0.83 -0.5
5,875,402 - Psyr_4956 0.83 -0.3
5,875,402 - Psyr_4956 0.83 -0.2
5,875,402 - Psyr_4956 0.83 -0.6
5,875,549 - -0.1
5,875,549 - -0.5
5,875,606 - +0.5
5,875,606 - -1.6
5,875,606 - +0.5
5,875,606 - -0.2
5,875,633 + -0.7
5,875,634 - -1.8
5,875,778 + -0.5
5,875,778 + +1.2
5,875,779 - -0.2
5,875,796 - Psyr_4957 0.11 -0.2
5,876,001 + Psyr_4957 0.31 -0.6
5,876,001 + Psyr_4957 0.31 -0.0
5,876,002 - Psyr_4957 0.31 -0.7
5,876,017 + Psyr_4957 0.32 -0.5
5,876,017 + Psyr_4957 0.32 -0.1
5,876,017 + Psyr_4957 0.32 +0.7
5,876,017 + Psyr_4957 0.32 -1.5
5,876,017 + Psyr_4957 0.32 +0.3
5,876,017 + Psyr_4957 0.32 +0.7
5,876,018 - Psyr_4957 0.32 +1.2
5,876,018 - Psyr_4957 0.32 -0.5
5,876,018 - Psyr_4957 0.32 -1.0
5,876,018 - Psyr_4957 0.32 +0.2
5,876,018 - Psyr_4957 0.32 +0.3
5,876,105 + Psyr_4957 0.40 +0.7
5,876,106 - Psyr_4957 0.40 +2.2
5,876,106 - Psyr_4957 0.40 +2.8
5,876,114 + Psyr_4957 0.41 +1.6
5,876,115 - Psyr_4957 0.41 -0.3
5,876,156 + Psyr_4957 0.45 +0.9
5,876,156 + Psyr_4957 0.45 +0.5
5,876,246 + Psyr_4957 0.54 -1.4
5,876,246 + Psyr_4957 0.54 +1.5
5,876,246 + Psyr_4957 0.54 -0.2
5,876,247 - Psyr_4957 0.54 -0.5
5,876,247 - Psyr_4957 0.54 +0.6
5,876,312 + Psyr_4957 0.60 -0.6
5,876,460 + Psyr_4957 0.73 +0.1
5,876,460 + Psyr_4957 0.73 -0.4
5,876,460 + Psyr_4957 0.73 -2.1
5,876,460 + Psyr_4957 0.73 +1.0
5,876,460 + Psyr_4957 0.73 +0.6
5,876,460 + Psyr_4957 0.73 +1.5
5,876,461 - Psyr_4957 0.74 -0.4
5,876,461 - Psyr_4957 0.74 +0.5
5,876,461 - Psyr_4957 0.74 +1.1
5,876,461 - Psyr_4957 0.74 -1.3
5,876,461 - Psyr_4957 0.74 -0.4
5,876,461 - Psyr_4957 0.74 -1.1
5,876,461 - Psyr_4957 0.74 -0.7
5,876,465 - Psyr_4957 0.74 -0.7
5,876,465 - Psyr_4957 0.74 -0.1
5,876,555 + Psyr_4957 0.82 +0.8
5,876,556 - Psyr_4957 0.82 -0.4
5,876,556 - Psyr_4957 0.82 -0.8
5,876,610 + Psyr_4957 0.87 -1.6
5,876,643 + +0.3
5,876,644 - -0.5
5,876,644 - +0.5
5,876,644 - +1.2
5,876,909 - +1.5
5,877,268 - Psyr_4958 0.20 +1.6
5,877,295 + Psyr_4958 0.21 +0.2
5,877,295 + Psyr_4958 0.21 +0.0
5,877,295 + Psyr_4958 0.21 -0.8
5,877,296 - Psyr_4958 0.21 -0.2
5,877,296 - Psyr_4958 0.21 +1.0

Or see this region's nucleotide sequence