Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4852 and Psyr_4853 are separated by 348 nucleotides Psyr_4853 and Psyr_4854 are separated by 138 nucleotides Psyr_4854 and Psyr_4855 are separated by 75 nucleotides
Psyr_4852: Psyr_4852 - D-3-phosphoglycerate dehydrogenase, at 5,759,127 to 5,760,356
_4852
Psyr_4853: Psyr_4853 - conserved hypothetical protein, at 5,760,705 to 5,761,142
_4853
Psyr_4854: Psyr_4854 - 2OG-Fe(II) oxygenase superfamily, at 5,761,281 to 5,761,982
_4854
Psyr_4855: Psyr_4855 - conserved hypothetical protein, at 5,762,058 to 5,762,816
_4855
Position (kb) 5760
5761
5762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5760.069 kb on + strand, within Psyr_4852 at 5760.069 kb on + strand, within Psyr_4852 at 5760.070 kb on - strand, within Psyr_4852 at 5760.070 kb on - strand, within Psyr_4852 at 5760.083 kb on + strand, within Psyr_4852 at 5760.083 kb on + strand, within Psyr_4852 at 5760.084 kb on - strand, within Psyr_4852 at 5760.262 kb on - strand at 5760.410 kb on + strand at 5760.513 kb on + strand at 5760.513 kb on + strand at 5760.706 kb on + strand at 5760.707 kb on - strand at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.166 kb on + strand at 5761.167 kb on - strand at 5761.167 kb on - strand at 5761.167 kb on - strand at 5761.214 kb on + strand at 5761.215 kb on - strand at 5761.417 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.486 kb on + strand, within Psyr_4854 at 5761.487 kb on - strand, within Psyr_4854 at 5761.487 kb on - strand, within Psyr_4854 at 5761.546 kb on + strand, within Psyr_4854 at 5761.719 kb on + strand, within Psyr_4854 at 5761.720 kb on - strand, within Psyr_4854 at 5761.829 kb on + strand, within Psyr_4854 at 5761.900 kb on - strand, within Psyr_4854 at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.919 kb on + strand at 5761.919 kb on + strand at 5761.920 kb on - strand at 5761.925 kb on + strand at 5761.926 kb on - strand at 5761.950 kb on + strand at 5761.950 kb on + strand at 5761.950 kb on + strand at 5761.951 kb on - strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5762.000 kb on - strand at 5762.000 kb on - strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,760,069 + Psyr_4852 0.77 -0.4 5,760,069 + Psyr_4852 0.77 +0.2 5,760,070 - Psyr_4852 0.77 -1.4 5,760,070 - Psyr_4852 0.77 +0.4 5,760,083 + Psyr_4852 0.78 +0.0 5,760,083 + Psyr_4852 0.78 +0.7 5,760,084 - Psyr_4852 0.78 +1.2 5,760,262 - -2.6 5,760,410 + -1.7 5,760,513 + +0.6 5,760,513 + -1.6 5,760,706 + +1.1 5,760,707 - -1.1 5,761,030 + Psyr_4853 0.74 -0.2 5,761,030 + Psyr_4853 0.74 +0.7 5,761,030 + Psyr_4853 0.74 +0.2 5,761,030 + Psyr_4853 0.74 +1.2 5,761,030 + Psyr_4853 0.74 +1.0 5,761,030 + Psyr_4853 0.74 +0.7 5,761,030 + Psyr_4853 0.74 -0.4 5,761,030 + Psyr_4853 0.74 +0.2 5,761,030 + Psyr_4853 0.74 +0.2 5,761,030 + Psyr_4853 0.74 -1.7 5,761,030 + Psyr_4853 0.74 -2.0 5,761,030 + Psyr_4853 0.74 +0.7 5,761,030 + Psyr_4853 0.74 +0.0 5,761,031 - Psyr_4853 0.74 +2.3 5,761,031 - Psyr_4853 0.74 +0.6 5,761,031 - Psyr_4853 0.74 -0.5 5,761,031 - Psyr_4853 0.74 -0.5 5,761,031 - Psyr_4853 0.74 +0.7 5,761,065 + Psyr_4853 0.82 +1.2 5,761,065 + Psyr_4853 0.82 -2.3 5,761,065 + Psyr_4853 0.82 +1.2 5,761,065 + Psyr_4853 0.82 -0.8 5,761,066 - Psyr_4853 0.82 +0.2 5,761,066 - Psyr_4853 0.82 -0.5 5,761,066 - Psyr_4853 0.82 +0.1 5,761,066 - Psyr_4853 0.82 +0.9 5,761,066 - Psyr_4853 0.82 -0.1 5,761,166 + -3.8 5,761,167 - +0.1 5,761,167 - -1.1 5,761,167 - +1.7 5,761,214 + +1.0 5,761,215 - +0.3 5,761,417 + Psyr_4854 0.19 -1.0 5,761,438 + Psyr_4854 0.22 -1.3 5,761,438 + Psyr_4854 0.22 -0.0 5,761,438 + Psyr_4854 0.22 +1.0 5,761,438 + Psyr_4854 0.22 -0.5 5,761,438 + Psyr_4854 0.22 +0.5 5,761,438 + Psyr_4854 0.22 +0.4 5,761,438 + Psyr_4854 0.22 +0.7 5,761,438 + Psyr_4854 0.22 +0.1 5,761,438 + Psyr_4854 0.22 -0.6 5,761,439 - Psyr_4854 0.23 +0.7 5,761,439 - Psyr_4854 0.23 +3.5 5,761,439 - Psyr_4854 0.23 -0.7 5,761,439 - Psyr_4854 0.23 -0.5 5,761,439 - Psyr_4854 0.23 +0.1 5,761,439 - Psyr_4854 0.23 +1.2 5,761,439 - Psyr_4854 0.23 -0.6 5,761,439 - Psyr_4854 0.23 -2.5 5,761,486 + Psyr_4854 0.29 +0.2 5,761,487 - Psyr_4854 0.29 -0.0 5,761,487 - Psyr_4854 0.29 -0.2 5,761,546 + Psyr_4854 0.38 -1.8 5,761,719 + Psyr_4854 0.62 +0.6 5,761,720 - Psyr_4854 0.63 -0.7 5,761,829 + Psyr_4854 0.78 -0.6 5,761,900 - Psyr_4854 0.88 +2.2 5,761,916 + -0.5 5,761,916 + +0.7 5,761,916 + -0.3 5,761,916 + -0.5 5,761,916 + +0.9 5,761,916 + -1.1 5,761,916 + +0.3 5,761,917 - +0.4 5,761,917 - +0.7 5,761,917 - -0.5 5,761,917 - -0.1 5,761,917 - +0.2 5,761,917 - +0.5 5,761,917 - -0.6 5,761,917 - -0.1 5,761,919 + -0.1 5,761,919 + -0.1 5,761,920 - -1.0 5,761,925 + -0.7 5,761,926 - -2.5 5,761,950 + +0.1 5,761,950 + +0.3 5,761,950 + -0.4 5,761,951 - +0.9 5,761,952 + +0.2 5,761,952 + +0.9 5,761,952 + +1.2 5,761,952 + -0.2 5,761,952 + +0.5 5,761,952 + -0.4 5,761,952 + +0.1 5,761,953 - +0.2 5,761,953 - +0.1 5,761,953 - -0.7 5,761,953 - +0.2 5,761,953 - -1.3 5,761,953 - +0.3 5,761,953 - -1.7 5,761,953 - -2.9 5,761,999 + +0.3 5,761,999 + -0.9 5,761,999 + +0.8 5,761,999 + -1.6 5,762,000 - +0.1 5,762,000 - +3.8 5,762,118 + -0.1 5,762,118 + +0.4 5,762,118 + +0.9 5,762,118 + -0.8 5,762,118 + +0.1 5,762,130 + -1.5 5,762,130 + -0.4 5,762,130 + -0.8 5,762,130 + -0.2 5,762,131 - +0.1 5,762,131 - -3.1 5,762,131 - +0.8 5,762,131 - -0.3 5,762,131 - -0.7 5,762,131 - -1.5 5,762,131 - +1.4
Or see this region's nucleotide sequence