Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4846 and Psyr_4847 are separated by 161 nucleotides Psyr_4847 and Psyr_4848 are separated by 45 nucleotides Psyr_4848 and Psyr_4849 are separated by 78 nucleotides
Psyr_4846: Psyr_4846 - L-threonine ammonia-lyase, at 5,752,274 to 5,753,788
_4846
Psyr_4847: Psyr_4847 - ribose-5-phosphate isomerase, at 5,753,950 to 5,754,621
_4847
Psyr_4848: Psyr_4848 - SdiA-regulated, at 5,754,667 to 5,755,620
_4848
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Position (kb) 5754
5755
5756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5753.745 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.830 kb on + strand at 5753.830 kb on + strand at 5753.856 kb on - strand at 5753.856 kb on - strand at 5753.889 kb on + strand at 5753.891 kb on + strand at 5753.891 kb on + strand at 5753.891 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5754.686 kb on + strand at 5754.686 kb on + strand at 5754.687 kb on - strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5755.058 kb on + strand, within Psyr_4848 at 5755.058 kb on + strand, within Psyr_4848 at 5755.059 kb on - strand, within Psyr_4848 at 5755.059 kb on - strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.321 kb on - strand, within Psyr_4848 at 5755.484 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.514 kb on - strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.549 kb on + strand at 5755.550 kb on - strand at 5755.560 kb on + strand at 5755.560 kb on + strand at 5755.560 kb on + strand at 5755.573 kb on + strand at 5755.574 kb on - strand at 5755.574 kb on - strand at 5755.636 kb on - strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.668 kb on + strand at 5755.669 kb on - strand at 5755.683 kb on + strand at 5755.683 kb on + strand at 5755.684 kb on - strand at 5755.684 kb on - strand at 5755.730 kb on + strand at 5755.730 kb on + strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.806 kb on + strand, within Psyr_4849 at 5755.807 kb on - strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.056 kb on + strand, within Psyr_4849 at 5756.132 kb on + strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.182 kb on - strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.368 kb on - strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.561 kb on - strand at 5756.574 kb on - strand at 5756.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,753,745 + -2.4 5,753,775 + -0.2 5,753,775 + +2.4 5,753,775 + +0.8 5,753,775 + +0.2 5,753,776 - -0.0 5,753,776 - -0.1 5,753,776 - -1.7 5,753,776 - -0.0 5,753,776 - +0.4 5,753,776 - +0.6 5,753,830 + -0.5 5,753,830 + +0.5 5,753,856 - -0.1 5,753,856 - +0.2 5,753,889 + -1.3 5,753,891 + -1.5 5,753,891 + +0.7 5,753,891 + +1.0 5,753,922 + +0.6 5,753,922 + +1.0 5,753,922 + +0.2 5,753,922 + -1.1 5,753,922 + +0.0 5,753,922 + +1.0 5,753,922 + -0.3 5,753,922 + +0.9 5,753,926 + -1.1 5,753,926 + -0.3 5,753,926 + +1.6 5,753,926 + +2.8 5,753,926 + -0.2 5,753,926 + -0.7 5,753,926 + -0.2 5,753,926 + +0.1 5,753,926 + -0.0 5,753,926 + +0.5 5,753,926 + +0.7 5,753,926 + +0.2 5,753,926 + -1.3 5,754,686 + +0.7 5,754,686 + -1.4 5,754,687 - -0.4 5,754,713 + +0.8 5,754,713 + +0.9 5,754,713 + -0.1 5,754,713 + -0.5 5,754,713 + +0.1 5,754,714 - -1.6 5,754,714 - +0.2 5,754,714 - -1.6 5,754,714 - -0.0 5,754,714 - -0.6 5,755,058 + Psyr_4848 0.41 +0.7 5,755,058 + Psyr_4848 0.41 -0.9 5,755,059 - Psyr_4848 0.41 +0.4 5,755,059 - Psyr_4848 0.41 -1.3 5,755,199 + Psyr_4848 0.56 +1.5 5,755,199 + Psyr_4848 0.56 -0.7 5,755,199 + Psyr_4848 0.56 +1.2 5,755,199 + Psyr_4848 0.56 -0.4 5,755,199 + Psyr_4848 0.56 -0.7 5,755,199 + Psyr_4848 0.56 -0.2 5,755,199 + Psyr_4848 0.56 +0.8 5,755,199 + Psyr_4848 0.56 +1.5 5,755,199 + Psyr_4848 0.56 -1.2 5,755,199 + Psyr_4848 0.56 -0.1 5,755,199 + Psyr_4848 0.56 +0.1 5,755,199 + Psyr_4848 0.56 -1.4 5,755,199 + Psyr_4848 0.56 +0.2 5,755,199 + Psyr_4848 0.56 -0.3 5,755,199 + Psyr_4848 0.56 +0.6 5,755,199 + Psyr_4848 0.56 -1.7 5,755,199 + Psyr_4848 0.56 +1.4 5,755,199 + Psyr_4848 0.56 -2.3 5,755,199 + Psyr_4848 0.56 -0.4 5,755,200 - Psyr_4848 0.56 -0.9 5,755,200 - Psyr_4848 0.56 +0.6 5,755,200 - Psyr_4848 0.56 +0.9 5,755,200 - Psyr_4848 0.56 -0.8 5,755,200 - Psyr_4848 0.56 +1.6 5,755,200 - Psyr_4848 0.56 +0.0 5,755,200 - Psyr_4848 0.56 +0.5 5,755,200 - Psyr_4848 0.56 +2.2 5,755,200 - Psyr_4848 0.56 -1.8 5,755,200 - Psyr_4848 0.56 +0.7 5,755,200 - Psyr_4848 0.56 -0.2 5,755,200 - Psyr_4848 0.56 -1.4 5,755,200 - Psyr_4848 0.56 -1.1 5,755,217 + Psyr_4848 0.58 +1.0 5,755,217 + Psyr_4848 0.58 +0.1 5,755,218 - Psyr_4848 0.58 +1.5 5,755,218 - Psyr_4848 0.58 -0.3 5,755,218 - Psyr_4848 0.58 -1.5 5,755,218 - Psyr_4848 0.58 +0.6 5,755,218 - Psyr_4848 0.58 +0.5 5,755,321 - Psyr_4848 0.69 +1.2 5,755,484 + Psyr_4848 0.86 -0.4 5,755,513 + Psyr_4848 0.89 -0.3 5,755,513 + Psyr_4848 0.89 +0.7 5,755,513 + Psyr_4848 0.89 -0.9 5,755,514 - Psyr_4848 0.89 -0.2 5,755,515 + Psyr_4848 0.89 -0.2 5,755,516 - Psyr_4848 0.89 +1.1 5,755,516 - Psyr_4848 0.89 -1.0 5,755,516 - Psyr_4848 0.89 +0.2 5,755,516 - Psyr_4848 0.89 -0.3 5,755,528 + +0.4 5,755,528 + +0.3 5,755,528 + +0.6 5,755,528 + -0.3 5,755,529 - +1.0 5,755,529 - +0.0 5,755,529 - -1.6 5,755,549 + +0.7 5,755,550 - -1.4 5,755,560 + +3.0 5,755,560 + -1.4 5,755,560 + +0.2 5,755,573 + -1.2 5,755,574 - -0.3 5,755,574 - -1.1 5,755,636 - +0.2 5,755,649 + -0.5 5,755,649 + -0.8 5,755,649 + -0.8 5,755,649 + -0.6 5,755,649 + -1.0 5,755,649 + -0.2 5,755,650 - +0.9 5,755,650 - +1.6 5,755,650 - +1.2 5,755,650 - +2.5 5,755,650 - -0.5 5,755,651 + +0.6 5,755,651 + -1.3 5,755,651 + +1.5 5,755,651 + +1.5 5,755,651 + +0.5 5,755,651 + -0.1 5,755,652 - +0.5 5,755,652 - +0.2 5,755,652 - +1.5 5,755,652 - -0.7 5,755,668 + +1.6 5,755,669 - -0.1 5,755,683 + -0.6 5,755,683 + -0.5 5,755,684 - -0.0 5,755,684 - -0.6 5,755,730 + +1.0 5,755,730 + -1.4 5,755,731 - +0.2 5,755,731 - +0.2 5,755,731 - +1.2 5,755,731 - +0.8 5,755,731 - -0.4 5,755,757 + -0.1 5,755,757 + +0.3 5,755,757 + -0.9 5,755,757 + -0.7 5,755,757 + +0.3 5,755,757 + -0.2 5,755,757 + +1.8 5,755,757 + -1.6 5,755,757 + -2.9 5,755,758 - -0.2 5,755,758 - -0.2 5,755,758 - +0.1 5,755,758 - +0.3 5,755,758 - -0.8 5,755,758 - -1.8 5,755,758 - -0.1 5,755,758 - -0.1 5,755,758 - -0.2 5,755,806 + Psyr_4849 0.11 +0.7 5,755,807 - Psyr_4849 0.11 +0.3 5,756,027 + Psyr_4849 0.35 +0.1 5,756,027 + Psyr_4849 0.35 +3.5 5,756,027 + Psyr_4849 0.35 +3.0 5,756,028 - Psyr_4849 0.35 +0.6 5,756,028 - Psyr_4849 0.35 +1.2 5,756,028 - Psyr_4849 0.35 -0.1 5,756,056 + Psyr_4849 0.38 +0.1 5,756,132 + Psyr_4849 0.46 -0.6 5,756,133 - Psyr_4849 0.46 +1.7 5,756,182 - Psyr_4849 0.51 -0.7 5,756,290 + Psyr_4849 0.63 -0.3 5,756,290 + Psyr_4849 0.63 +1.2 5,756,290 + Psyr_4849 0.63 -0.4 5,756,290 + Psyr_4849 0.63 +0.9 5,756,290 + Psyr_4849 0.63 -0.3 5,756,290 + Psyr_4849 0.63 -0.5 5,756,291 - Psyr_4849 0.63 +0.5 5,756,291 - Psyr_4849 0.63 -1.5 5,756,291 - Psyr_4849 0.63 -0.3 5,756,291 - Psyr_4849 0.63 -0.3 5,756,291 - Psyr_4849 0.63 +2.3 5,756,291 - Psyr_4849 0.63 -0.8 5,756,291 - Psyr_4849 0.63 -0.5 5,756,368 - Psyr_4849 0.71 -0.3 5,756,369 + Psyr_4849 0.71 -1.6 5,756,369 + Psyr_4849 0.71 +0.1 5,756,369 + Psyr_4849 0.71 +1.6 5,756,369 + Psyr_4849 0.71 +1.4 5,756,370 - Psyr_4849 0.71 -0.1 5,756,370 - Psyr_4849 0.71 -0.2 5,756,370 - Psyr_4849 0.71 +0.2 5,756,370 - Psyr_4849 0.71 -1.0 5,756,561 - -0.7 5,756,574 - -0.1 5,756,595 - -0.3
Or see this region's nucleotide sequence