Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4075 and Psyr_4076 are separated by 54 nucleotides Psyr_4076 and Psyr_4077 are separated by 158 nucleotides Psyr_4077 and Psyr_4078 are separated by 54 nucleotides
Psyr_4075: Psyr_4075 - Short-chain dehydrogenase/reductase SDR, at 4,858,540 to 4,859,298
_4075
Psyr_4076: Psyr_4076 - conserved hypothetical protein, at 4,859,353 to 4,860,360
_4076
Psyr_4077: Psyr_4077 - Methylated-DNA-[protein]-cysteine S-methyltransferase, at 4,860,519 to 4,860,875
_4077
Psyr_4078: Psyr_4078 - AmpG-related permease, at 4,860,930 to 4,862,480
_4078
Position (kb) 4859
4860
4861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4858.362 kb on + strand at 4858.362 kb on + strand at 4858.410 kb on + strand at 4858.411 kb on - strand at 4858.411 kb on - strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.457 kb on + strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.458 kb on - strand at 4858.460 kb on - strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.480 kb on + strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.481 kb on - strand at 4858.540 kb on - strand at 4858.563 kb on - strand at 4858.610 kb on - strand at 4858.610 kb on - strand at 4858.714 kb on + strand, within Psyr_4075 at 4858.715 kb on - strand, within Psyr_4075 at 4858.715 kb on - strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.980 kb on + strand, within Psyr_4075 at 4858.981 kb on - strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.023 kb on + strand, within Psyr_4075 at 4859.024 kb on - strand, within Psyr_4075 at 4859.024 kb on - strand, within Psyr_4075 at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.233 kb on + strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.234 kb on - strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.235 kb on + strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.236 kb on - strand at 4859.252 kb on - strand at 4859.296 kb on + strand at 4859.296 kb on + strand at 4859.355 kb on - strand at 4859.362 kb on + strand at 4859.382 kb on - strand at 4859.382 kb on - strand at 4859.382 kb on - strand at 4859.471 kb on + strand, within Psyr_4076 at 4859.471 kb on + strand, within Psyr_4076 at 4859.472 kb on - strand, within Psyr_4076 at 4859.574 kb on - strand, within Psyr_4076 at 4859.582 kb on + strand, within Psyr_4076 at 4859.583 kb on - strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.361 kb on - strand at 4860.361 kb on - strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.380 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.503 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.541 kb on + strand at 4860.542 kb on - strand at 4860.542 kb on - strand at 4860.592 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.690 kb on - strand, within Psyr_4077 at 4860.805 kb on + strand, within Psyr_4077 at 4860.845 kb on + strand at 4860.873 kb on + strand at 4860.873 kb on + strand at 4860.966 kb on + strand at 4860.986 kb on - strand at 4860.991 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,858,362 + -0.3 4,858,362 + +0.2 4,858,410 + -0.3 4,858,411 - +0.0 4,858,411 - -2.3 4,858,457 + -1.6 4,858,457 + -1.5 4,858,457 + +0.6 4,858,457 + -0.3 4,858,457 + -0.0 4,858,457 + -1.4 4,858,457 + +1.6 4,858,457 + +0.8 4,858,457 + -0.1 4,858,458 - -2.1 4,858,458 - +0.1 4,858,458 - -0.9 4,858,458 - -0.8 4,858,458 - -0.2 4,858,458 - +0.6 4,858,458 - +1.0 4,858,458 - -2.1 4,858,458 - -0.1 4,858,458 - -0.1 4,858,458 - -0.1 4,858,458 - +0.6 4,858,458 - +0.6 4,858,458 - -1.0 4,858,458 - +1.5 4,858,458 - +1.4 4,858,460 - +2.2 4,858,480 + -0.3 4,858,480 + -0.2 4,858,480 + +0.1 4,858,480 + +0.4 4,858,481 - +1.5 4,858,481 - +1.9 4,858,481 - +0.9 4,858,481 - +1.9 4,858,481 - -0.1 4,858,481 - -0.7 4,858,540 - -0.1 4,858,563 - +0.3 4,858,610 - +0.8 4,858,610 - -0.4 4,858,714 + Psyr_4075 0.23 -1.1 4,858,715 - Psyr_4075 0.23 -0.3 4,858,715 - Psyr_4075 0.23 -0.3 4,858,980 + Psyr_4075 0.58 +1.2 4,858,980 + Psyr_4075 0.58 -0.5 4,858,980 + Psyr_4075 0.58 -1.7 4,858,980 + Psyr_4075 0.58 -0.2 4,858,981 - Psyr_4075 0.58 -0.5 4,859,023 + Psyr_4075 0.64 +0.3 4,859,023 + Psyr_4075 0.64 -0.1 4,859,023 + Psyr_4075 0.64 -0.8 4,859,024 - Psyr_4075 0.64 -0.2 4,859,024 - Psyr_4075 0.64 +0.1 4,859,233 + -0.9 4,859,233 + +0.6 4,859,233 + +0.4 4,859,233 + +1.7 4,859,233 + +2.3 4,859,233 + -1.3 4,859,233 + +0.2 4,859,233 + +0.7 4,859,234 - +0.4 4,859,234 - +1.0 4,859,234 - -1.8 4,859,234 - +0.6 4,859,234 - +0.1 4,859,234 - -0.4 4,859,234 - -0.1 4,859,234 - +2.3 4,859,234 - -0.6 4,859,234 - -0.6 4,859,234 - +0.3 4,859,234 - +0.3 4,859,234 - -1.4 4,859,234 - -0.4 4,859,235 + +1.0 4,859,235 + +1.2 4,859,235 + -1.1 4,859,235 + +0.9 4,859,235 + -1.6 4,859,235 + -0.7 4,859,235 + -0.5 4,859,235 + -2.1 4,859,235 + -0.5 4,859,236 - +0.7 4,859,236 - +0.3 4,859,236 - -0.1 4,859,236 - -0.1 4,859,252 - -0.7 4,859,296 + -0.3 4,859,296 + +0.1 4,859,355 - +1.6 4,859,362 + +0.4 4,859,382 - -0.6 4,859,382 - -0.6 4,859,382 - +0.1 4,859,471 + Psyr_4076 0.12 +0.9 4,859,471 + Psyr_4076 0.12 +0.1 4,859,472 - Psyr_4076 0.12 +1.6 4,859,574 - Psyr_4076 0.22 +0.4 4,859,582 + Psyr_4076 0.23 +1.9 4,859,583 - Psyr_4076 0.23 -1.6 4,859,606 + Psyr_4076 0.25 -0.6 4,859,606 + Psyr_4076 0.25 +0.8 4,859,607 - Psyr_4076 0.25 +1.6 4,859,607 - Psyr_4076 0.25 -0.1 4,859,762 + Psyr_4076 0.41 +0.9 4,859,762 + Psyr_4076 0.41 +0.6 4,859,762 + Psyr_4076 0.41 -0.5 4,859,762 + Psyr_4076 0.41 +0.1 4,859,762 + Psyr_4076 0.41 -0.6 4,859,763 - Psyr_4076 0.41 +0.3 4,859,763 - Psyr_4076 0.41 +1.2 4,859,870 + Psyr_4076 0.51 -1.4 4,859,870 + Psyr_4076 0.51 +1.3 4,859,870 + Psyr_4076 0.51 +0.0 4,859,870 + Psyr_4076 0.51 +0.3 4,859,870 + Psyr_4076 0.51 +0.2 4,859,871 - Psyr_4076 0.51 +0.9 4,859,871 - Psyr_4076 0.51 +0.1 4,859,933 + Psyr_4076 0.58 +0.3 4,859,933 + Psyr_4076 0.58 +0.2 4,859,933 + Psyr_4076 0.58 +3.7 4,859,934 - Psyr_4076 0.58 -1.1 4,859,934 - Psyr_4076 0.58 +1.6 4,859,934 - Psyr_4076 0.58 +1.1 4,860,039 + Psyr_4076 0.68 +0.0 4,860,039 + Psyr_4076 0.68 +1.2 4,860,039 + Psyr_4076 0.68 +0.2 4,860,040 - Psyr_4076 0.68 -0.7 4,860,040 - Psyr_4076 0.68 +0.5 4,860,040 - Psyr_4076 0.68 -0.1 4,860,040 - Psyr_4076 0.68 +0.3 4,860,040 - Psyr_4076 0.68 +0.7 4,860,216 - Psyr_4076 0.86 +0.7 4,860,216 - Psyr_4076 0.86 -1.1 4,860,360 + -0.1 4,860,360 + +0.9 4,860,360 + -1.0 4,860,360 + +0.2 4,860,360 + +0.2 4,860,360 + -0.6 4,860,361 - -1.2 4,860,361 - -0.9 4,860,371 + -1.4 4,860,371 + -1.0 4,860,371 + +1.0 4,860,371 + +0.1 4,860,371 + +0.4 4,860,371 + -0.7 4,860,371 + -1.7 4,860,372 - +2.1 4,860,372 - +0.0 4,860,372 - +0.8 4,860,372 - -1.0 4,860,372 - +0.3 4,860,372 - +0.5 4,860,372 - -0.1 4,860,372 - +0.7 4,860,372 - -0.3 4,860,380 + +0.5 4,860,432 + -0.1 4,860,432 + -0.0 4,860,432 + +0.3 4,860,432 + -1.6 4,860,432 + -1.3 4,860,432 + +0.7 4,860,433 - -1.0 4,860,433 - +1.6 4,860,433 - +1.1 4,860,433 - +0.3 4,860,433 - +0.5 4,860,433 - -0.6 4,860,433 - -0.2 4,860,503 + -0.3 4,860,535 + +0.8 4,860,535 + -0.9 4,860,535 + +0.2 4,860,535 + -0.9 4,860,535 + -1.3 4,860,536 - +2.6 4,860,536 - -0.2 4,860,536 - +1.1 4,860,536 - +0.6 4,860,541 + +1.8 4,860,542 - -1.5 4,860,542 - -0.6 4,860,592 - Psyr_4077 0.20 +2.7 4,860,653 - Psyr_4077 0.38 +1.7 4,860,653 - Psyr_4077 0.38 +1.9 4,860,653 - Psyr_4077 0.38 +0.0 4,860,653 - Psyr_4077 0.38 -0.7 4,860,690 - Psyr_4077 0.48 +1.4 4,860,805 + Psyr_4077 0.80 +0.9 4,860,845 + +0.2 4,860,873 + -0.0 4,860,873 + -0.1 4,860,966 + +1.2 4,860,986 - -0.7 4,860,991 + -0.1 4,861,023 + +0.4 4,861,023 + -0.4 4,861,023 + -0.3 4,861,023 + -1.0 4,861,023 + -3.1 4,861,023 + +0.9 4,861,024 - -2.0 4,861,024 - -0.0 4,861,024 - -0.4 4,861,024 - +0.4 4,861,024 - -0.1 4,861,024 - +1.1 4,861,024 - -0.4 4,861,024 - -1.7 4,861,024 - +1.2 4,861,024 - -0.4 4,861,025 + +0.4 4,861,025 + +1.5 4,861,025 + -0.4 4,861,025 + +0.9 4,861,025 + +1.5 4,861,025 + -0.8 4,861,025 + -1.2 4,861,025 + -1.2 4,861,025 + +0.2 4,861,025 + -1.3 4,861,025 + +0.9 4,861,025 + -0.2 4,861,025 + +0.7 4,861,025 + +1.9 4,861,025 + +2.3 4,861,025 + -0.9 4,861,025 + -0.7 4,861,025 + -1.0 4,861,026 - -1.4 4,861,026 - +2.5 4,861,026 - -0.4 4,861,026 - +2.5 4,861,026 - -0.6 4,861,026 - +1.3 4,861,026 - -0.1 4,861,026 - +0.6 4,861,026 - +0.8 4,861,026 - +2.5 4,861,026 - +1.5 4,861,026 - -1.4 4,861,026 - -2.2 4,861,026 - +0.4 4,861,026 - -1.3 4,861,026 - -0.7 4,861,026 - +2.1 4,861,026 - -0.4 4,861,026 - -1.2 4,861,026 - -0.5 4,861,026 - +0.2 4,861,124 + Psyr_4078 0.13 +0.5 4,861,124 + Psyr_4078 0.13 -1.0 4,861,124 + Psyr_4078 0.13 +1.5 4,861,124 + Psyr_4078 0.13 +0.9 4,861,125 - Psyr_4078 0.13 +0.3 4,861,125 - Psyr_4078 0.13 -2.0 4,861,125 - Psyr_4078 0.13 +0.5
Or see this region's nucleotide sequence