Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3419 and Psyr_3420 are separated by 10 nucleotides Psyr_3420 and Psyr_3421 are separated by 2 nucleotides Psyr_3421 and Psyr_3422 are separated by 108 nucleotides Psyr_3422 and Psyr_3423 are separated by 95 nucleotides
Psyr_3419: Psyr_3419 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 4,082,060 to 4,083,472
_3419
Psyr_3420: Psyr_3420 - conserved hypothetical protein, at 4,083,483 to 4,084,019
_3420
Psyr_3421: Psyr_3421 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 4,084,022 to 4,086,496
_3421
Psyr_3422: Psyr_3422 - membrane protein, putative, at 4,086,605 to 4,087,354
_3422
Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835
_3423
Position (kb) 4084
4085
4086
4087 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4083.255 kb on - strand, within Psyr_3419 at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.464 kb on - strand at 4083.464 kb on - strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.630 kb on + strand, within Psyr_3420 at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4086.487 kb on + strand at 4087.296 kb on + strand at 4087.361 kb on + strand at 4087.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,083,255 - Psyr_3419 0.85 +0.8 4,083,463 + -0.4 4,083,463 + -1.3 4,083,463 + -0.2 4,083,464 - -1.1 4,083,464 - -1.8 4,083,627 + Psyr_3420 0.27 +0.3 4,083,627 + Psyr_3420 0.27 -1.4 4,083,627 + Psyr_3420 0.27 +0.5 4,083,627 + +3.3 4,083,627 + Psyr_3420 0.27 +0.4 4,083,627 + Psyr_3420 0.27 +0.8 4,083,627 + Psyr_3420 0.27 -0.7 4,083,630 + Psyr_3420 0.27 -1.0 4,086,487 + +0.6 4,086,487 + +0.5 4,086,487 + -0.2 4,086,487 + -0.8 4,086,487 + -0.1 4,087,296 + -1.6 4,087,361 + +2.8 4,087,493 - +0.1
Or see this region's nucleotide sequence