Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3416 and Psyr_3417 are separated by 125 nucleotides Psyr_3417 and Psyr_3418 overlap by 1 nucleotides Psyr_3418 and Psyr_3419 are separated by 64 nucleotides Psyr_3419 and Psyr_3420 are separated by 10 nucleotides Psyr_3420 and Psyr_3421 are separated by 2 nucleotides
Psyr_3416: Psyr_3416 - Cytochrome c oxidase cbb3-type, subunit III, at 4,080,189 to 4,081,166
_3416
Psyr_3417: Psyr_3417 - Prevent-host-death protein, at 4,081,292 to 4,081,543
_3417
Psyr_3418: Psyr_3418 - PilT protein, N-terminal, at 4,081,543 to 4,081,995
_3418
Psyr_3419: Psyr_3419 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 4,082,060 to 4,083,472
_3419
Psyr_3420: Psyr_3420 - conserved hypothetical protein, at 4,083,483 to 4,084,019
_3420
Psyr_3421: Psyr_3421 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 4,084,022 to 4,086,496
_3421
Position (kb) 4082
4083
4084 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4081.260 kb on + strand at 4081.269 kb on + strand at 4081.300 kb on + strand at 4081.421 kb on + strand, within Psyr_3417 at 4081.680 kb on + strand, within Psyr_3418 at 4081.748 kb on + strand, within Psyr_3418 at 4081.748 kb on + strand, within Psyr_3418 at 4081.748 kb on + strand, within Psyr_3418 at 4081.748 kb on + strand, within Psyr_3418 at 4081.748 kb on + strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.749 kb on - strand, within Psyr_3418 at 4081.975 kb on + strand at 4082.079 kb on + strand at 4082.080 kb on - strand at 4082.130 kb on - strand at 4082.292 kb on - strand, within Psyr_3419 at 4082.408 kb on + strand, within Psyr_3419 at 4082.411 kb on - strand, within Psyr_3419 at 4082.594 kb on + strand, within Psyr_3419 at 4082.690 kb on + strand, within Psyr_3419 at 4082.691 kb on - strand, within Psyr_3419 at 4082.691 kb on - strand, within Psyr_3419 at 4082.695 kb on + strand, within Psyr_3419 at 4082.721 kb on + strand, within Psyr_3419 at 4082.721 kb on + strand, within Psyr_3419 at 4082.722 kb on - strand, within Psyr_3419 at 4082.729 kb on + strand, within Psyr_3419 at 4082.729 kb on + strand, within Psyr_3419 at 4082.729 kb on + strand, within Psyr_3419 at 4082.729 kb on + strand, within Psyr_3419 at 4082.729 kb on + strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.730 kb on - strand, within Psyr_3419 at 4082.975 kb on - strand, within Psyr_3419 at 4083.255 kb on - strand, within Psyr_3419 at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.463 kb on + strand at 4083.464 kb on - strand at 4083.464 kb on - strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.627 kb on + strand, within Psyr_3420 at 4083.630 kb on + strand, within Psyr_3420
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,081,260 + +0.6 4,081,269 + -0.3 4,081,300 + +0.4 4,081,421 + Psyr_3417 0.51 +0.3 4,081,680 + Psyr_3418 0.30 -1.6 4,081,748 + Psyr_3418 0.45 +2.0 4,081,748 + Psyr_3418 0.45 -1.2 4,081,748 + Psyr_3418 0.45 +1.1 4,081,748 + Psyr_3418 0.45 +0.4 4,081,748 + Psyr_3418 0.45 +0.3 4,081,749 - Psyr_3418 0.45 -0.4 4,081,749 - Psyr_3418 0.45 -0.2 4,081,749 - Psyr_3418 0.45 -0.8 4,081,749 - Psyr_3418 0.45 -1.5 4,081,749 - Psyr_3418 0.45 +3.3 4,081,749 - Psyr_3418 0.45 -1.3 4,081,749 - Psyr_3418 0.45 -0.8 4,081,749 - Psyr_3418 0.45 +0.6 4,081,975 + -2.8 4,082,079 + +0.8 4,082,080 - -2.4 4,082,130 - +1.8 4,082,292 - Psyr_3419 0.16 -1.1 4,082,408 + Psyr_3419 0.25 -1.7 4,082,411 - Psyr_3419 0.25 -0.2 4,082,594 + Psyr_3419 0.38 +1.8 4,082,690 + Psyr_3419 0.45 -2.7 4,082,691 - Psyr_3419 0.45 -1.2 4,082,691 - Psyr_3419 0.45 +0.8 4,082,695 + Psyr_3419 0.45 -2.6 4,082,721 + Psyr_3419 0.47 -2.8 4,082,721 + Psyr_3419 0.47 -1.6 4,082,722 - Psyr_3419 0.47 -1.4 4,082,729 + Psyr_3419 0.47 -2.0 4,082,729 + Psyr_3419 0.47 -1.7 4,082,729 + Psyr_3419 0.47 -1.6 4,082,729 + Psyr_3419 0.47 -2.1 4,082,729 + Psyr_3419 0.47 +0.8 4,082,730 - Psyr_3419 0.47 -0.2 4,082,730 - Psyr_3419 0.47 -2.7 4,082,730 - Psyr_3419 0.47 -1.2 4,082,730 - Psyr_3419 0.47 +0.8 4,082,730 - Psyr_3419 0.47 -0.8 4,082,730 - Psyr_3419 0.47 +0.9 4,082,975 - Psyr_3419 0.65 -2.8 4,083,255 - Psyr_3419 0.85 +0.8 4,083,463 + -0.4 4,083,463 + -1.3 4,083,463 + -0.2 4,083,464 - -1.1 4,083,464 - -1.8 4,083,627 + Psyr_3420 0.27 +0.3 4,083,627 + Psyr_3420 0.27 -1.4 4,083,627 + Psyr_3420 0.27 +0.5 4,083,627 + +3.3 4,083,627 + Psyr_3420 0.27 +0.4 4,083,627 + Psyr_3420 0.27 +0.8 4,083,627 + Psyr_3420 0.27 -0.7 4,083,630 + Psyr_3420 0.27 -1.0
Or see this region's nucleotide sequence