Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2384

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2382 and Psyr_2383 are separated by 2 nucleotidesPsyr_2383 and Psyr_2384 are separated by 22 nucleotidesPsyr_2384 and Psyr_2385 overlap by 4 nucleotides Psyr_2382: Psyr_2382 - conservedhypothetical protein, at 2,761,385 to 2,761,816 _2382 Psyr_2383: Psyr_2383 - Protein of unknown function DUF72, at 2,761,819 to 2,762,553 _2383 Psyr_2384: Psyr_2384 - response regulator receiver protein, at 2,762,576 to 2,762,953 _2384 Psyr_2385: Psyr_2385 - Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase, at 2,762,950 to 2,765,961 _2385 Position (kb) 2762 2763Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.613 kb on + strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.614 kb on - strand, within Psyr_2382at 2761.692 kb on + strand, within Psyr_2382at 2761.692 kb on + strand, within Psyr_2382at 2761.692 kb on + strand, within Psyr_2382at 2761.692 kb on + strand, within Psyr_2382at 2761.693 kb on - strand, within Psyr_2382at 2761.693 kb on - strand, within Psyr_2382at 2761.782 kb on + strandat 2761.783 kb on - strandat 2761.811 kb on + strandat 2761.811 kb on + strandat 2761.812 kb on - strandat 2761.812 kb on - strandat 2761.832 kb on - strandat 2761.832 kb on - strandat 2761.867 kb on + strandat 2761.909 kb on + strand, within Psyr_2383at 2761.910 kb on - strand, within Psyr_2383at 2761.975 kb on + strand, within Psyr_2383at 2762.354 kb on - strand, within Psyr_2383at 2762.396 kb on - strand, within Psyr_2383at 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.555 kb on - strandat 2762.785 kb on - strand, within Psyr_2384at 2762.953 kb on + strandat 2762.953 kb on + strandat 2762.954 kb on - strandat 2763.631 kb on + strand, within Psyr_2385at 2763.632 kb on - strand, within Psyr_2385at 2763.651 kb on + strand, within Psyr_2385at 2763.691 kb on + strand, within Psyr_2385at 2763.692 kb on - strand, within Psyr_2385at 2763.763 kb on - strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.853 kb on + strand, within Psyr_2385at 2763.854 kb on - strand, within Psyr_2385

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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2,761,613 + Psyr_2382 0.53 +0.7
2,761,613 + Psyr_2382 0.53 -0.3
2,761,613 + Psyr_2382 0.53 -0.6
2,761,613 + Psyr_2382 0.53 -0.0
2,761,613 + Psyr_2382 0.53 +0.9
2,761,613 + Psyr_2382 0.53 +0.0
2,761,613 + Psyr_2382 0.53 +0.0
2,761,614 - Psyr_2382 0.53 -0.7
2,761,614 - Psyr_2382 0.53 -0.4
2,761,614 - Psyr_2382 0.53 +0.0
2,761,614 - Psyr_2382 0.53 -0.0
2,761,614 - Psyr_2382 0.53 -0.5
2,761,614 - Psyr_2382 0.53 +1.3
2,761,614 - Psyr_2382 0.53 -0.0
2,761,614 - Psyr_2382 0.53 -1.2
2,761,614 - Psyr_2382 0.53 -0.9
2,761,692 + Psyr_2382 0.71 -2.3
2,761,692 + Psyr_2382 0.71 -0.3
2,761,692 + Psyr_2382 0.71 +1.3
2,761,692 + Psyr_2382 0.71 +0.8
2,761,693 - Psyr_2382 0.71 +0.1
2,761,693 - Psyr_2382 0.71 -1.9
2,761,782 + -1.3
2,761,783 - +2.5
2,761,811 + +1.0
2,761,811 + -1.6
2,761,812 - +0.6
2,761,812 - +0.3
2,761,832 - +1.0
2,761,832 - +0.4
2,761,867 + -1.1
2,761,909 + Psyr_2383 0.12 -0.2
2,761,910 - Psyr_2383 0.12 +0.0
2,761,975 + Psyr_2383 0.21 -2.2
2,762,354 - Psyr_2383 0.73 -0.2
2,762,396 - Psyr_2383 0.79 -0.8
2,762,554 + +0.4
2,762,554 + +1.0
2,762,554 + -1.5
2,762,554 + +0.6
2,762,554 + +1.6
2,762,555 - +0.2
2,762,785 - Psyr_2384 0.55 -1.0
2,762,953 + +0.8
2,762,953 + -0.4
2,762,954 - -0.9
2,763,631 + Psyr_2385 0.23 +0.2
2,763,632 - Psyr_2385 0.23 +1.7
2,763,651 + Psyr_2385 0.23 -0.8
2,763,691 + Psyr_2385 0.25 -2.4
2,763,692 - Psyr_2385 0.25 +0.7
2,763,763 - Psyr_2385 0.27 +0.0
2,763,764 + Psyr_2385 0.27 +3.3
2,763,764 + Psyr_2385 0.27 -1.0
2,763,764 + Psyr_2385 0.27 -0.6
2,763,765 - Psyr_2385 0.27 +1.5
2,763,765 - Psyr_2385 0.27 +1.2
2,763,765 - Psyr_2385 0.27 -0.5
2,763,765 - Psyr_2385 0.27 -0.4
2,763,765 - Psyr_2385 0.27 -1.0
2,763,853 + Psyr_2385 0.30 -0.3
2,763,854 - Psyr_2385 0.30 -1.8

Or see this region's nucleotide sequence