Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2382 and Psyr_2383 are separated by 2 nucleotides Psyr_2383 and Psyr_2384 are separated by 22 nucleotides Psyr_2384 and Psyr_2385 overlap by 4 nucleotides
Psyr_2382: Psyr_2382 - conservedhypothetical protein, at 2,761,385 to 2,761,816
_2382
Psyr_2383: Psyr_2383 - Protein of unknown function DUF72, at 2,761,819 to 2,762,553
_2383
Psyr_2384: Psyr_2384 - response regulator receiver protein, at 2,762,576 to 2,762,953
_2384
Psyr_2385: Psyr_2385 - Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase, at 2,762,950 to 2,765,961
_2385
Position (kb)
2762
2763 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.613 kb on + strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.614 kb on - strand, within Psyr_2382 at 2761.692 kb on + strand, within Psyr_2382 at 2761.692 kb on + strand, within Psyr_2382 at 2761.692 kb on + strand, within Psyr_2382 at 2761.692 kb on + strand, within Psyr_2382 at 2761.693 kb on - strand, within Psyr_2382 at 2761.693 kb on - strand, within Psyr_2382 at 2761.782 kb on + strand at 2761.783 kb on - strand at 2761.811 kb on + strand at 2761.811 kb on + strand at 2761.812 kb on - strand at 2761.812 kb on - strand at 2761.832 kb on - strand at 2761.832 kb on - strand at 2761.867 kb on + strand at 2761.909 kb on + strand, within Psyr_2383 at 2761.910 kb on - strand, within Psyr_2383 at 2761.975 kb on + strand, within Psyr_2383 at 2762.354 kb on - strand, within Psyr_2383 at 2762.396 kb on - strand, within Psyr_2383 at 2762.554 kb on + strand at 2762.554 kb on + strand at 2762.554 kb on + strand at 2762.554 kb on + strand at 2762.554 kb on + strand at 2762.555 kb on - strand at 2762.785 kb on - strand, within Psyr_2384 at 2762.953 kb on + strand at 2762.953 kb on + strand at 2762.954 kb on - strand at 2763.631 kb on + strand, within Psyr_2385 at 2763.632 kb on - strand, within Psyr_2385 at 2763.651 kb on + strand, within Psyr_2385 at 2763.691 kb on + strand, within Psyr_2385 at 2763.692 kb on - strand, within Psyr_2385 at 2763.763 kb on - strand, within Psyr_2385 at 2763.764 kb on + strand, within Psyr_2385 at 2763.764 kb on + strand, within Psyr_2385 at 2763.764 kb on + strand, within Psyr_2385 at 2763.765 kb on - strand, within Psyr_2385 at 2763.765 kb on - strand, within Psyr_2385 at 2763.765 kb on - strand, within Psyr_2385 at 2763.765 kb on - strand, within Psyr_2385 at 2763.765 kb on - strand, within Psyr_2385 at 2763.853 kb on + strand, within Psyr_2385 at 2763.854 kb on - strand, within Psyr_2385
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 2,761,613 + Psyr_2382 0.53 +0.7 2,761,613 + Psyr_2382 0.53 -0.3 2,761,613 + Psyr_2382 0.53 -0.6 2,761,613 + Psyr_2382 0.53 -0.0 2,761,613 + Psyr_2382 0.53 +0.9 2,761,613 + Psyr_2382 0.53 +0.0 2,761,613 + Psyr_2382 0.53 +0.0 2,761,614 - Psyr_2382 0.53 -0.7 2,761,614 - Psyr_2382 0.53 -0.4 2,761,614 - Psyr_2382 0.53 +0.0 2,761,614 - Psyr_2382 0.53 -0.0 2,761,614 - Psyr_2382 0.53 -0.5 2,761,614 - Psyr_2382 0.53 +1.3 2,761,614 - Psyr_2382 0.53 -0.0 2,761,614 - Psyr_2382 0.53 -1.2 2,761,614 - Psyr_2382 0.53 -0.9 2,761,692 + Psyr_2382 0.71 -2.3 2,761,692 + Psyr_2382 0.71 -0.3 2,761,692 + Psyr_2382 0.71 +1.3 2,761,692 + Psyr_2382 0.71 +0.8 2,761,693 - Psyr_2382 0.71 +0.1 2,761,693 - Psyr_2382 0.71 -1.9 2,761,782 + -1.3 2,761,783 - +2.5 2,761,811 + +1.0 2,761,811 + -1.6 2,761,812 - +0.6 2,761,812 - +0.3 2,761,832 - +1.0 2,761,832 - +0.4 2,761,867 + -1.1 2,761,909 + Psyr_2383 0.12 -0.2 2,761,910 - Psyr_2383 0.12 +0.0 2,761,975 + Psyr_2383 0.21 -2.2 2,762,354 - Psyr_2383 0.73 -0.2 2,762,396 - Psyr_2383 0.79 -0.8 2,762,554 + +0.4 2,762,554 + +1.0 2,762,554 + -1.5 2,762,554 + +0.6 2,762,554 + +1.6 2,762,555 - +0.2 2,762,785 - Psyr_2384 0.55 -1.0 2,762,953 + +0.8 2,762,953 + -0.4 2,762,954 - -0.9 2,763,631 + Psyr_2385 0.23 +0.2 2,763,632 - Psyr_2385 0.23 +1.7 2,763,651 + Psyr_2385 0.23 -0.8 2,763,691 + Psyr_2385 0.25 -2.4 2,763,692 - Psyr_2385 0.25 +0.7 2,763,763 - Psyr_2385 0.27 +0.0 2,763,764 + Psyr_2385 0.27 +3.3 2,763,764 + Psyr_2385 0.27 -1.0 2,763,764 + Psyr_2385 0.27 -0.6 2,763,765 - Psyr_2385 0.27 +1.5 2,763,765 - Psyr_2385 0.27 +1.2 2,763,765 - Psyr_2385 0.27 -0.5 2,763,765 - Psyr_2385 0.27 -0.4 2,763,765 - Psyr_2385 0.27 -1.0 2,763,853 + Psyr_2385 0.30 -0.3 2,763,854 - Psyr_2385 0.30 -1.8
Or see this region's nucleotide sequence