Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2246 and Psyr_2247 are separated by 227 nucleotides Psyr_2247 and Psyr_2248 are separated by 44 nucleotides
Psyr_2246: Psyr_2246 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 2,611,442 to 2,613,331
_2246
Psyr_2247: Psyr_2247 - ABC transporter, at 2,613,559 to 2,614,392
_2247
Psyr_2248: Psyr_2248 - Phosphonate-binding periplasmic protein, at 2,614,437 to 2,615,447
_2248
Position (kb)
2613
2614
2615 Strain fitness (log2 ratio)
-2
-1
0
1 at 2612.572 kb on + strand, within Psyr_2246 at 2612.944 kb on - strand, within Psyr_2246 at 2612.944 kb on - strand, within Psyr_2246 at 2612.944 kb on - strand, within Psyr_2246 at 2613.455 kb on - strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.578 kb on + strand at 2613.579 kb on - strand at 2613.579 kb on - strand at 2613.636 kb on + strand at 2613.638 kb on + strand at 2613.638 kb on + strand at 2613.638 kb on + strand at 2613.827 kb on - strand, within Psyr_2247 at 2613.828 kb on + strand, within Psyr_2247 at 2613.828 kb on + strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2613.829 kb on - strand, within Psyr_2247 at 2614.899 kb on + strand, within Psyr_2248 at 2614.899 kb on + strand, within Psyr_2248 at 2614.900 kb on - strand, within Psyr_2248 at 2614.914 kb on + strand, within Psyr_2248 at 2614.917 kb on + strand, within Psyr_2248 at 2614.917 kb on + strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2614.918 kb on - strand, within Psyr_2248 at 2615.194 kb on - strand, within Psyr_2248
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 2,612,572 + Psyr_2246 0.60 +0.9 2,612,944 - Psyr_2246 0.79 -1.1 2,612,944 - Psyr_2246 0.79 +0.9 2,612,944 - Psyr_2246 0.79 +1.5 2,613,455 - -0.6 2,613,578 + +0.6 2,613,578 + -0.1 2,613,578 + +0.2 2,613,578 + -1.4 2,613,578 + +0.2 2,613,579 - +0.3 2,613,579 - -0.6 2,613,636 + +0.1 2,613,638 + -0.1 2,613,638 + -0.6 2,613,638 + -0.6 2,613,827 - Psyr_2247 0.32 +0.3 2,613,828 + Psyr_2247 0.32 +0.5 2,613,828 + Psyr_2247 0.32 +0.0 2,613,829 - Psyr_2247 0.32 -0.2 2,613,829 - Psyr_2247 0.32 +0.8 2,613,829 - Psyr_2247 0.32 +1.6 2,614,899 + Psyr_2248 0.46 +0.5 2,614,899 + Psyr_2248 0.46 +1.6 2,614,900 - Psyr_2248 0.46 -1.6 2,614,914 + Psyr_2248 0.47 +0.3 2,614,917 + Psyr_2248 0.47 -0.1 2,614,917 + Psyr_2248 0.47 -0.2 2,614,918 - Psyr_2248 0.48 +0.2 2,614,918 - Psyr_2248 0.48 +0.3 2,614,918 - Psyr_2248 0.48 +0.9 2,615,194 - Psyr_2248 0.75 -1.8
Or see this region's nucleotide sequence