Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2013 and Psyr_2014 are separated by 98 nucleotides Psyr_2014 and Psyr_2015 are separated by 301 nucleotides Psyr_2015 and Psyr_2016 are separated by 93 nucleotides Psyr_2016 and Psyr_2017 are separated by 307 nucleotides
Psyr_2013: Psyr_2013 - succinyl-CoA synthetase (ADP-forming) alpha subunit, at 2,336,753 to 2,337,634
_2013
Psyr_2014: Psyr_2014 - conserved hypothetical protein, at 2,337,733 to 2,338,308
_2014
Psyr_2015: Psyr_2015 - Branched-chain amino acid transport system II carrier protein, at 2,338,610 to 2,339,923
_2015
Psyr_2016: Psyr_2016 - lipoprotein, putative, at 2,340,017 to 2,340,277
_2016
Psyr_2017: Psyr_2017 - Heat shock protein Hsp90:ATP-binding region, ATPase-like protein, at 2,340,585 to 2,342,498
_2017
Position (kb)
2338
2339
2340 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2337.734 kb on + strand at 2337.734 kb on + strand at 2337.734 kb on + strand at 2337.735 kb on - strand at 2337.735 kb on - strand at 2337.744 kb on + strand at 2337.779 kb on - strand at 2338.122 kb on + strand, within Psyr_2014 at 2338.122 kb on + strand, within Psyr_2014 at 2338.124 kb on + strand, within Psyr_2014 at 2338.124 kb on + strand, within Psyr_2014 at 2338.125 kb on - strand, within Psyr_2014 at 2338.125 kb on - strand, within Psyr_2014 at 2338.125 kb on - strand, within Psyr_2014 at 2338.125 kb on - strand, within Psyr_2014 at 2338.314 kb on + strand at 2338.315 kb on - strand at 2338.315 kb on - strand at 2338.315 kb on - strand at 2338.315 kb on - strand at 2338.315 kb on - strand at 2338.328 kb on + strand at 2338.346 kb on + strand at 2338.389 kb on - strand at 2338.521 kb on + strand at 2338.521 kb on + strand at 2338.522 kb on - strand at 2338.522 kb on - strand at 2338.522 kb on - strand at 2338.583 kb on + strand at 2338.583 kb on + strand at 2338.701 kb on + strand at 2338.702 kb on - strand at 2338.728 kb on + strand at 2338.728 kb on + strand at 2338.728 kb on + strand at 2338.728 kb on + strand at 2338.728 kb on + strand at 2338.728 kb on + strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.729 kb on - strand at 2338.874 kb on + strand, within Psyr_2015 at 2338.979 kb on + strand, within Psyr_2015 at 2338.991 kb on + strand, within Psyr_2015 at 2338.991 kb on + strand, within Psyr_2015 at 2338.991 kb on + strand, within Psyr_2015 at 2338.992 kb on - strand, within Psyr_2015 at 2338.992 kb on - strand, within Psyr_2015 at 2339.187 kb on - strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.333 kb on + strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.334 kb on - strand, within Psyr_2015 at 2339.414 kb on + strand, within Psyr_2015 at 2339.414 kb on + strand, within Psyr_2015 at 2339.414 kb on + strand, within Psyr_2015 at 2339.415 kb on - strand, within Psyr_2015 at 2339.418 kb on + strand, within Psyr_2015 at 2339.418 kb on + strand, within Psyr_2015 at 2339.419 kb on - strand, within Psyr_2015 at 2339.419 kb on - strand, within Psyr_2015 at 2339.419 kb on - strand, within Psyr_2015 at 2339.419 kb on - strand, within Psyr_2015 at 2339.419 kb on - strand, within Psyr_2015 at 2339.493 kb on + strand, within Psyr_2015 at 2339.494 kb on - strand, within Psyr_2015 at 2339.519 kb on + strand, within Psyr_2015 at 2339.520 kb on - strand, within Psyr_2015 at 2339.883 kb on + strand at 2339.979 kb on + strand at 2339.981 kb on + strand at 2339.995 kb on + strand at 2339.995 kb on + strand at 2339.995 kb on + strand at 2339.996 kb on - strand at 2339.996 kb on - strand at 2340.018 kb on + strand at 2340.018 kb on + strand at 2340.018 kb on + strand at 2340.019 kb on - strand at 2340.019 kb on - strand at 2340.019 kb on - strand at 2340.258 kb on + strand at 2340.258 kb on + strand at 2340.258 kb on + strand at 2340.258 kb on + strand at 2340.292 kb on + strand at 2340.311 kb on + strand at 2340.311 kb on + strand at 2340.312 kb on - strand at 2340.312 kb on - strand at 2340.333 kb on - strand at 2340.333 kb on - strand at 2340.354 kb on + strand at 2340.355 kb on - strand at 2340.563 kb on - strand at 2340.563 kb on - strand at 2340.564 kb on + strand at 2340.564 kb on + strand at 2340.564 kb on + strand at 2340.564 kb on + strand at 2340.564 kb on + strand at 2340.565 kb on - strand at 2340.565 kb on - strand at 2340.565 kb on - strand at 2340.565 kb on - strand at 2340.565 kb on - strand at 2340.590 kb on + strand at 2340.590 kb on + strand at 2340.591 kb on - strand at 2340.591 kb on - strand at 2340.591 kb on - strand at 2340.591 kb on - strand at 2340.672 kb on + strand at 2340.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 2,337,734 + -0.3 2,337,734 + -1.0 2,337,734 + -0.5 2,337,735 - -0.9 2,337,735 - +0.6 2,337,744 + -0.9 2,337,779 - -0.3 2,338,122 + Psyr_2014 0.68 -0.3 2,338,122 + Psyr_2014 0.68 +1.6 2,338,124 + Psyr_2014 0.68 -1.0 2,338,124 + Psyr_2014 0.68 -0.5 2,338,125 - Psyr_2014 0.68 +1.8 2,338,125 - Psyr_2014 0.68 -0.4 2,338,125 - Psyr_2014 0.68 +0.8 2,338,125 - Psyr_2014 0.68 +0.9 2,338,314 + +0.4 2,338,315 - -2.0 2,338,315 - +0.7 2,338,315 - -0.7 2,338,315 - +1.2 2,338,315 - +0.1 2,338,328 + -0.7 2,338,346 + +1.1 2,338,389 - +1.2 2,338,521 + -1.0 2,338,521 + +0.2 2,338,522 - -1.5 2,338,522 - +1.1 2,338,522 - +0.1 2,338,583 + +3.2 2,338,583 + +0.3 2,338,701 + -1.2 2,338,702 - -0.2 2,338,728 + -1.2 2,338,728 + +1.4 2,338,728 + +0.9 2,338,728 + -0.7 2,338,728 + -0.1 2,338,728 + -2.6 2,338,729 - +0.0 2,338,729 - +0.3 2,338,729 - +0.4 2,338,729 - +0.3 2,338,729 - +0.1 2,338,729 - +0.6 2,338,729 - -0.9 2,338,729 - -0.3 2,338,729 - +0.7 2,338,874 + Psyr_2015 0.20 +1.4 2,338,979 + Psyr_2015 0.28 +2.1 2,338,991 + Psyr_2015 0.29 +1.0 2,338,991 + Psyr_2015 0.29 -0.2 2,338,991 + Psyr_2015 0.29 +3.2 2,338,992 - Psyr_2015 0.29 -1.1 2,338,992 - Psyr_2015 0.29 +0.0 2,339,187 - Psyr_2015 0.44 -1.0 2,339,333 + Psyr_2015 0.55 -0.2 2,339,333 + Psyr_2015 0.55 +0.7 2,339,333 + Psyr_2015 0.55 +1.3 2,339,333 + Psyr_2015 0.55 -3.2 2,339,333 + Psyr_2015 0.55 -0.6 2,339,333 + Psyr_2015 0.55 -1.7 2,339,333 + Psyr_2015 0.55 -2.0 2,339,333 + Psyr_2015 0.55 +1.7 2,339,334 - Psyr_2015 0.55 +0.3 2,339,334 - Psyr_2015 0.55 +1.1 2,339,334 - Psyr_2015 0.55 +0.6 2,339,334 - Psyr_2015 0.55 +0.5 2,339,334 - Psyr_2015 0.55 -0.1 2,339,334 - Psyr_2015 0.55 +0.5 2,339,334 - Psyr_2015 0.55 +2.4 2,339,334 - Psyr_2015 0.55 +0.2 2,339,414 + Psyr_2015 0.61 +0.4 2,339,414 + Psyr_2015 0.61 -0.5 2,339,414 + Psyr_2015 0.61 +1.1 2,339,415 - Psyr_2015 0.61 -1.2 2,339,418 + Psyr_2015 0.61 +0.8 2,339,418 + Psyr_2015 0.61 +0.4 2,339,419 - Psyr_2015 0.62 +0.4 2,339,419 - Psyr_2015 0.62 -0.0 2,339,419 - Psyr_2015 0.62 +0.5 2,339,419 - Psyr_2015 0.62 +0.4 2,339,419 - Psyr_2015 0.62 +3.2 2,339,493 + Psyr_2015 0.67 -0.2 2,339,494 - Psyr_2015 0.67 -0.5 2,339,519 + Psyr_2015 0.69 +0.8 2,339,520 - Psyr_2015 0.69 +0.6 2,339,883 + -0.9 2,339,979 + -0.5 2,339,981 + -0.1 2,339,995 + +0.3 2,339,995 + -2.2 2,339,995 + -0.9 2,339,996 - -0.6 2,339,996 - -0.9 2,340,018 + -0.0 2,340,018 + -2.0 2,340,018 + -1.1 2,340,019 - +1.3 2,340,019 - +0.5 2,340,019 - +0.7 2,340,258 + -0.3 2,340,258 + -1.0 2,340,258 + -0.2 2,340,258 + +0.8 2,340,292 + -0.3 2,340,311 + +0.6 2,340,311 + -0.1 2,340,312 - -0.0 2,340,312 - -1.1 2,340,333 - -1.5 2,340,333 - -0.5 2,340,354 + -1.0 2,340,355 - -1.0 2,340,563 - +1.0 2,340,563 - +0.0 2,340,564 + +1.0 2,340,564 + -0.3 2,340,564 + +0.8 2,340,564 + +0.1 2,340,564 + +1.3 2,340,565 - +0.5 2,340,565 - -0.0 2,340,565 - -2.2 2,340,565 - +1.2 2,340,565 - -0.3 2,340,590 + -0.1 2,340,590 + -0.1 2,340,591 - -2.0 2,340,591 - -0.9 2,340,591 - -1.4 2,340,591 - +0.2 2,340,672 + +2.8 2,340,672 + +0.4
Or see this region's nucleotide sequence