Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1594

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1593 and Psyr_1594 are separated by 206 nucleotidesPsyr_1594 and Psyr_1595 are separated by 366 nucleotidesPsyr_1595 and Psyr_1596 are separated by 100 nucleotides Psyr_1593: Psyr_1593 - conserved hypothetical protein, at 1,791,708 to 1,793,117 _1593 Psyr_1594: Psyr_1594 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 1,793,324 to 1,794,094 _1594 Psyr_1595: Psyr_1595 - Protein of unknown function DUF1232, at 1,794,461 to 1,794,913 _1595 Psyr_1596: Psyr_1596 - Helix-turn-helix motif protein, at 1,795,014 to 1,795,352 _1596 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1792.419 kb on - strand, within Psyr_1593at 1792.419 kb on - strand, within Psyr_1593at 1792.544 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.638 kb on + strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.639 kb on - strand, within Psyr_1593at 1792.671 kb on + strand, within Psyr_1593at 1792.671 kb on + strand, within Psyr_1593at 1792.675 kb on - strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.716 kb on + strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.717 kb on - strand, within Psyr_1593at 1792.875 kb on + strand, within Psyr_1593at 1792.875 kb on + strand, within Psyr_1593at 1792.876 kb on - strand, within Psyr_1593at 1792.876 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.909 kb on - strand, within Psyr_1593at 1792.965 kb on + strand, within Psyr_1593at 1792.966 kb on - strand, within Psyr_1593at 1792.966 kb on - strand, within Psyr_1593at 1793.271 kb on + strandat 1793.321 kb on - strandat 1793.435 kb on + strand, within Psyr_1594at 1793.435 kb on + strand, within Psyr_1594at 1793.435 kb on + strand, within Psyr_1594at 1793.436 kb on - strand, within Psyr_1594at 1793.479 kb on + strand, within Psyr_1594at 1793.479 kb on + strand, within Psyr_1594at 1793.506 kb on - strand, within Psyr_1594at 1793.506 kb on - strand, within Psyr_1594at 1793.668 kb on + strand, within Psyr_1594at 1793.709 kb on - strand, within Psyr_1594at 1793.750 kb on - strand, within Psyr_1594at 1794.092 kb on + strandat 1794.092 kb on + strandat 1794.093 kb on - strandat 1794.093 kb on - strandat 1794.093 kb on - strandat 1794.093 kb on - strandat 1794.152 kb on + strandat 1794.152 kb on + strandat 1794.152 kb on + strandat 1794.152 kb on + strandat 1794.199 kb on + strandat 1794.199 kb on + strandat 1794.199 kb on + strandat 1794.199 kb on + strandat 1794.199 kb on + strandat 1794.199 kb on + strandat 1794.200 kb on - strandat 1794.200 kb on - strandat 1794.249 kb on + strandat 1794.249 kb on + strandat 1794.250 kb on - strandat 1794.376 kb on + strandat 1794.376 kb on + strandat 1794.376 kb on + strandat 1794.377 kb on - strandat 1794.428 kb on + strandat 1794.574 kb on + strand, within Psyr_1595at 1794.574 kb on + strand, within Psyr_1595at 1794.575 kb on - strand, within Psyr_1595at 1794.698 kb on + strand, within Psyr_1595at 1794.698 kb on + strand, within Psyr_1595at 1794.698 kb on + strand, within Psyr_1595at 1794.698 kb on + strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.699 kb on - strand, within Psyr_1595at 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.911 kb on + strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.912 kb on - strandat 1794.952 kb on + strandat 1794.953 kb on - strandat 1794.965 kb on + strandat 1794.998 kb on - strandat 1794.998 kb on - strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.000 kb on + strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.001 kb on - strandat 1795.053 kb on + strand, within Psyr_1596at 1795.077 kb on + strand, within Psyr_1596at 1795.077 kb on + strand, within Psyr_1596at 1795.078 kb on - strand, within Psyr_1596

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,792,419 - Psyr_1593 0.50 +1.4
1,792,419 - Psyr_1593 0.50 -2.2
1,792,544 + Psyr_1593 0.59 +0.2
1,792,638 + Psyr_1593 0.66 +1.3
1,792,638 + Psyr_1593 0.66 -1.3
1,792,638 + Psyr_1593 0.66 -0.1
1,792,638 + Psyr_1593 0.66 +1.1
1,792,639 - Psyr_1593 0.66 +1.0
1,792,639 - Psyr_1593 0.66 -1.0
1,792,639 - Psyr_1593 0.66 +1.6
1,792,639 - Psyr_1593 0.66 +1.0
1,792,639 - Psyr_1593 0.66 +2.7
1,792,671 + Psyr_1593 0.68 -2.2
1,792,671 + Psyr_1593 0.68 -1.6
1,792,675 - Psyr_1593 0.69 -0.2
1,792,716 + Psyr_1593 0.71 -0.1
1,792,716 + Psyr_1593 0.71 -0.9
1,792,716 + Psyr_1593 0.71 +1.1
1,792,716 + Psyr_1593 0.71 -2.1
1,792,716 + Psyr_1593 0.71 +0.1
1,792,716 + Psyr_1593 0.71 -1.0
1,792,716 + Psyr_1593 0.71 +1.0
1,792,716 + Psyr_1593 0.71 -2.2
1,792,716 + Psyr_1593 0.71 +0.6
1,792,717 - Psyr_1593 0.72 -0.5
1,792,717 - Psyr_1593 0.72 -0.6
1,792,717 - Psyr_1593 0.72 +1.1
1,792,717 - Psyr_1593 0.72 +0.0
1,792,717 - Psyr_1593 0.72 -0.0
1,792,717 - Psyr_1593 0.72 +0.6
1,792,717 - Psyr_1593 0.72 -0.4
1,792,717 - Psyr_1593 0.72 -0.3
1,792,717 - Psyr_1593 0.72 -0.3
1,792,717 - Psyr_1593 0.72 -0.8
1,792,717 - Psyr_1593 0.72 +2.0
1,792,875 + Psyr_1593 0.83 -0.8
1,792,875 + Psyr_1593 0.83 -1.3
1,792,876 - Psyr_1593 0.83 +0.6
1,792,876 - Psyr_1593 0.83 +2.1
1,792,909 - Psyr_1593 0.85 +0.8
1,792,909 - Psyr_1593 0.85 +0.4
1,792,909 - Psyr_1593 0.85 -0.2
1,792,909 - Psyr_1593 0.85 -1.0
1,792,965 + Psyr_1593 0.89 +0.1
1,792,966 - Psyr_1593 0.89 -1.0
1,792,966 - Psyr_1593 0.89 -1.3
1,793,271 + -0.5
1,793,321 - -0.1
1,793,435 + Psyr_1594 0.14 -2.3
1,793,435 + Psyr_1594 0.14 -0.8
1,793,435 + Psyr_1594 0.14 -0.2
1,793,436 - Psyr_1594 0.15 -1.0
1,793,479 + Psyr_1594 0.20 -0.8
1,793,479 + Psyr_1594 0.20 -1.4
1,793,506 - Psyr_1594 0.24 -1.4
1,793,506 - Psyr_1594 0.24 -0.2
1,793,668 + Psyr_1594 0.45 -0.2
1,793,709 - Psyr_1594 0.50 +0.8
1,793,750 - Psyr_1594 0.55 -3.0
1,794,092 + -0.5
1,794,092 + +0.4
1,794,093 - +0.5
1,794,093 - -1.1
1,794,093 - +1.2
1,794,093 - -0.3
1,794,152 + -0.8
1,794,152 + +0.5
1,794,152 + +0.2
1,794,152 + +0.5
1,794,199 + +0.1
1,794,199 + +0.9
1,794,199 + +2.5
1,794,199 + +0.5
1,794,199 + -0.1
1,794,199 + +0.1
1,794,200 - +0.2
1,794,200 - +1.3
1,794,249 + +0.5
1,794,249 + -1.0
1,794,250 - +2.0
1,794,376 + +0.5
1,794,376 + +1.0
1,794,376 + +0.6
1,794,377 - +3.0
1,794,428 + -0.0
1,794,574 + Psyr_1595 0.25 +0.6
1,794,574 + Psyr_1595 0.25 +0.0
1,794,575 - Psyr_1595 0.25 -0.6
1,794,698 + Psyr_1595 0.52 +1.3
1,794,698 + Psyr_1595 0.52 -0.0
1,794,698 + Psyr_1595 0.52 +0.1
1,794,698 + Psyr_1595 0.52 +0.1
1,794,699 - Psyr_1595 0.53 -0.4
1,794,699 - Psyr_1595 0.53 +0.4
1,794,699 - Psyr_1595 0.53 -0.4
1,794,699 - Psyr_1595 0.53 +2.6
1,794,699 - Psyr_1595 0.53 -1.4
1,794,699 - Psyr_1595 0.53 -0.7
1,794,911 + -0.8
1,794,911 + +3.0
1,794,911 + +2.0
1,794,911 + -0.0
1,794,911 + -0.5
1,794,911 + -0.2
1,794,911 + -0.4
1,794,911 + -1.5
1,794,911 + -2.3
1,794,911 + -0.7
1,794,911 + -0.4
1,794,911 + -2.2
1,794,912 - -0.6
1,794,912 - +1.1
1,794,912 - -0.5
1,794,912 - -3.5
1,794,912 - +1.4
1,794,912 - +3.6
1,794,912 - -2.0
1,794,912 - -0.0
1,794,952 + -0.1
1,794,953 - -2.6
1,794,965 + +0.1
1,794,998 - +2.0
1,794,998 - -1.9
1,795,000 + +0.2
1,795,000 + -0.0
1,795,000 + +0.6
1,795,000 + +2.2
1,795,000 + -1.0
1,795,000 + +0.7
1,795,001 - +0.1
1,795,001 - -3.1
1,795,001 - -0.3
1,795,001 - +0.3
1,795,001 - +0.7
1,795,053 + Psyr_1596 0.12 +3.1
1,795,077 + Psyr_1596 0.19 -1.3
1,795,077 + Psyr_1596 0.19 +0.3
1,795,078 - Psyr_1596 0.19 +1.0

Or see this region's nucleotide sequence