Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1273

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1271 and Psyr_1272 are separated by 61 nucleotidesPsyr_1272 and Psyr_1273 are separated by 150 nucleotidesPsyr_1273 and Psyr_1274 are separated by 69 nucleotidesPsyr_1274 and Psyr_1275 overlap by 1 nucleotides Psyr_1271: Psyr_1271 - ErfK/YbiS/YcfS/YnhG, at 1,437,672 to 1,438,235 _1271 Psyr_1272: Psyr_1272 - NUDIX hydrolase, at 1,438,297 to 1,438,848 _1272 Psyr_1273: Psyr_1273 - NUDIX hydrolase, at 1,438,999 to 1,439,595 _1273 Psyr_1274: Psyr_1274 - transferase hexapeptide repeat protein, at 1,439,665 to 1,440,189 _1274 Psyr_1275: Psyr_1275 - Protein of unknown function DUF1289, at 1,440,189 to 1,440,407 _1275 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1438.236 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.339 kb on - strandat 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.384 kb on + strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.445 kb on - strand, within Psyr_1272at 1438.505 kb on + strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.528 kb on - strand, within Psyr_1272at 1438.550 kb on + strand, within Psyr_1272at 1438.551 kb on - strand, within Psyr_1272at 1438.551 kb on - strand, within Psyr_1272at 1438.551 kb on - strand, within Psyr_1272at 1438.749 kb on - strand, within Psyr_1272at 1438.778 kb on + strand, within Psyr_1272at 1438.778 kb on + strand, within Psyr_1272at 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.025 kb on - strandat 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.324 kb on - strand, within Psyr_1273at 1439.464 kb on + strand, within Psyr_1273at 1439.464 kb on + strand, within Psyr_1273at 1439.465 kb on - strand, within Psyr_1273at 1439.477 kb on - strand, within Psyr_1273at 1439.492 kb on - strand, within Psyr_1273at 1439.492 kb on - strand, within Psyr_1273at 1439.531 kb on + strand, within Psyr_1273at 1439.545 kb on + strandat 1439.546 kb on - strandat 1439.546 kb on - strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.643 kb on - strandat 1439.942 kb on - strand, within Psyr_1274at 1439.995 kb on + strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1440.137 kb on - strandat 1440.137 kb on - strandat 1440.137 kb on - strandat 1440.140 kb on + strandat 1440.140 kb on + strandat 1440.140 kb on + strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.239 kb on + strand, within Psyr_1275at 1440.239 kb on + strand, within Psyr_1275at 1440.239 kb on + strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.263 kb on + strand, within Psyr_1275at 1440.264 kb on - strand, within Psyr_1275at 1440.424 kb on + strandat 1440.424 kb on + strandat 1440.424 kb on + strandat 1440.425 kb on - strandat 1440.425 kb on - strandat 1440.425 kb on - strandat 1440.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,438,236 + -0.1
1,438,253 + +0.0
1,438,253 + +0.7
1,438,253 + -0.2
1,438,253 + +2.0
1,438,339 - +0.2
1,438,379 + Psyr_1272 0.15 -0.0
1,438,379 + Psyr_1272 0.15 +0.1
1,438,379 + Psyr_1272 0.15 -0.0
1,438,379 + Psyr_1272 0.15 +3.8
1,438,379 + Psyr_1272 0.15 +1.1
1,438,380 - Psyr_1272 0.15 +0.7
1,438,380 - Psyr_1272 0.15 -0.4
1,438,380 - Psyr_1272 0.15 +0.4
1,438,380 - Psyr_1272 0.15 +0.1
1,438,380 - Psyr_1272 0.15 +0.7
1,438,380 - Psyr_1272 0.15 +0.3
1,438,380 - Psyr_1272 0.15 +0.1
1,438,384 + Psyr_1272 0.16 +0.3
1,438,385 - Psyr_1272 0.16 +2.1
1,438,445 - Psyr_1272 0.27 -0.0
1,438,505 + Psyr_1272 0.38 +0.2
1,438,506 - Psyr_1272 0.38 +0.5
1,438,506 - Psyr_1272 0.38 +0.8
1,438,528 - Psyr_1272 0.42 -0.7
1,438,550 + Psyr_1272 0.46 +0.2
1,438,551 - Psyr_1272 0.46 +1.9
1,438,551 - Psyr_1272 0.46 +1.4
1,438,551 - Psyr_1272 0.46 -1.4
1,438,749 - Psyr_1272 0.82 +0.4
1,438,778 + Psyr_1272 0.87 +2.7
1,438,778 + Psyr_1272 0.87 -0.1
1,439,012 + +0.4
1,439,012 + +1.5
1,439,012 + +1.0
1,439,012 + -0.0
1,439,012 + -0.4
1,439,012 + -2.0
1,439,012 + -0.0
1,439,012 + -0.5
1,439,013 - +2.0
1,439,013 - -0.6
1,439,013 - -0.6
1,439,013 - +1.0
1,439,013 - -0.0
1,439,013 - -0.1
1,439,025 - +0.4
1,439,323 + Psyr_1273 0.54 +0.1
1,439,323 + Psyr_1273 0.54 +3.3
1,439,323 + Psyr_1273 0.54 +0.3
1,439,323 + Psyr_1273 0.54 +0.7
1,439,324 - Psyr_1273 0.54 +0.6
1,439,464 + Psyr_1273 0.78 +1.1
1,439,464 + Psyr_1273 0.78 +0.3
1,439,465 - Psyr_1273 0.78 +1.5
1,439,477 - Psyr_1273 0.80 +1.9
1,439,492 - Psyr_1273 0.83 -0.6
1,439,492 - Psyr_1273 0.83 +0.1
1,439,531 + Psyr_1273 0.89 +0.1
1,439,545 + +1.0
1,439,546 - -1.0
1,439,546 - -0.0
1,439,625 + -0.6
1,439,625 + +0.5
1,439,625 + -0.1
1,439,625 + +2.5
1,439,626 - -0.9
1,439,626 - -0.1
1,439,626 - -0.9
1,439,626 - +0.2
1,439,626 - -0.0
1,439,626 - +0.2
1,439,626 - +2.1
1,439,626 - +2.3
1,439,626 - -0.8
1,439,626 - -0.0
1,439,626 - -0.5
1,439,626 - +0.0
1,439,626 - -0.8
1,439,626 - +0.2
1,439,626 - +3.3
1,439,643 - -0.5
1,439,942 - Psyr_1274 0.53 +0.4
1,439,995 + Psyr_1274 0.63 -1.4
1,439,996 - Psyr_1274 0.63 -2.7
1,439,996 - Psyr_1274 0.63 -0.0
1,439,996 - Psyr_1274 0.63 +0.1
1,439,996 - Psyr_1274 0.63 +0.8
1,440,137 - +1.1
1,440,137 - +4.4
1,440,137 - +0.2
1,440,140 + -1.3
1,440,140 + +0.4
1,440,140 + +0.5
1,440,141 - -0.3
1,440,141 - +2.1
1,440,141 - +0.5
1,440,141 - -0.1
1,440,141 - -1.5
1,440,141 - -1.2
1,440,141 - -0.1
1,440,141 - +0.0
1,440,141 - +1.3
1,440,239 + Psyr_1275 0.23 +0.7
1,440,239 + Psyr_1275 0.23 -1.2
1,440,239 + Psyr_1275 0.23 -1.4
1,440,240 - Psyr_1275 0.23 +0.6
1,440,240 - Psyr_1275 0.23 -1.1
1,440,240 - Psyr_1275 0.23 -0.0
1,440,240 - Psyr_1275 0.23 +0.4
1,440,263 + Psyr_1275 0.34 +1.0
1,440,264 - Psyr_1275 0.34 -0.2
1,440,424 + -0.6
1,440,424 + -0.6
1,440,424 + -0.9
1,440,425 - +0.4
1,440,425 - -1.3
1,440,425 - +2.0
1,440,425 - -0.5

Or see this region's nucleotide sequence