Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1238

Experiment: KB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1237 and Psyr_1238 are separated by 81 nucleotidesPsyr_1238 and Psyr_1239 are separated by 71 nucleotidesPsyr_1239 and Psyr_1240 overlap by 23 nucleotidesPsyr_1240 and Psyr_1241 are separated by 44 nucleotides Psyr_1237: Psyr_1237 - cysteine desulfurase IscS, at 1,394,772 to 1,395,986 _1237 Psyr_1238: Psyr_1238 - FeS cluster assembly scaffold IscU, at 1,396,068 to 1,396,454 _1238 Psyr_1239: Psyr_1239 - HesB/YadR/YfhF:Iron-sulfur cluster assembly protein IscA, at 1,396,526 to 1,396,849 _1239 Psyr_1240: Psyr_1240 - Co-chaperone Hsc20, at 1,396,827 to 1,397,381 _1240 Psyr_1241: Psyr_1241 - Fe-S protein assembly chaperone HscA, at 1,397,426 to 1,399,288 _1241 Position (kb) 1396 1397Strain fitness (log2 ratio) -1 0 1at 1395.984 kb on + strandat 1395.989 kb on + strandat 1396.004 kb on + strandat 1396.004 kb on + strandat 1396.856 kb on + strandat 1396.856 kb on + strandat 1396.856 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB
remove
1,395,984 + +0.8
1,395,989 + +1.4
1,396,004 + -0.5
1,396,004 + -0.3
1,396,856 + -0.3
1,396,856 + -0.3
1,396,856 + -0.6

Or see this region's nucleotide sequence