Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1137

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1135 and Psyr_1136 are separated by 93 nucleotidesPsyr_1136 and Psyr_1137 are separated by 17 nucleotidesPsyr_1137 and Psyr_1138 are separated by 116 nucleotidesPsyr_1138 and Psyr_1139 are separated by 65 nucleotides Psyr_1135: Psyr_1135 - conserved hypothetical protein, at 1,287,148 to 1,288,146 _1135 Psyr_1136: Psyr_1136 - conserved hypothetical protein, at 1,288,240 to 1,288,464 _1136 Psyr_1137: Psyr_1137 - Protein of unknown function UPF0153, at 1,288,482 to 1,289,237 _1137 Psyr_1138: Psyr_1138 - GCN5-related N-acetyltransferase, at 1,289,354 to 1,289,815 _1138 Psyr_1139: Psyr_1139 - Response regulator receiver:CheW-like protein, at 1,289,881 to 1,290,777 _1139 Position (kb) 1288 1289 1290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1287.508 kb on + strand, within Psyr_1135at 1287.508 kb on + strand, within Psyr_1135at 1287.509 kb on - strand, within Psyr_1135at 1287.607 kb on - strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.801 kb on - strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.138 kb on + strandat 1288.139 kb on - strandat 1288.181 kb on + strandat 1288.182 kb on - strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.510 kb on + strandat 1288.678 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.753 kb on - strand, within Psyr_1137at 1288.753 kb on - strand, within Psyr_1137at 1288.805 kb on + strand, within Psyr_1137at 1288.916 kb on - strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1289.030 kb on + strand, within Psyr_1137at 1289.031 kb on - strand, within Psyr_1137at 1289.181 kb on + strandat 1289.238 kb on + strandat 1289.239 kb on - strandat 1289.263 kb on - strandat 1289.385 kb on + strandat 1289.470 kb on + strand, within Psyr_1138at 1289.471 kb on - strand, within Psyr_1138at 1289.904 kb on + strandat 1289.904 kb on + strandat 1289.904 kb on + strandat 1289.904 kb on + strandat 1289.904 kb on + strandat 1289.904 kb on + strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1289.905 kb on - strandat 1290.032 kb on + strand, within Psyr_1139at 1290.032 kb on + strand, within Psyr_1139at 1290.032 kb on + strand, within Psyr_1139at 1290.032 kb on + strand, within Psyr_1139at 1290.032 kb on + strand, within Psyr_1139at 1290.033 kb on - strand, within Psyr_1139at 1290.033 kb on - strand, within Psyr_1139at 1290.054 kb on + strand, within Psyr_1139at 1290.138 kb on + strand, within Psyr_1139at 1290.219 kb on + strand, within Psyr_1139at 1290.219 kb on + strand, within Psyr_1139at 1290.219 kb on + strand, within Psyr_1139at 1290.219 kb on + strand, within Psyr_1139at 1290.220 kb on - strand, within Psyr_1139at 1290.220 kb on - strand, within Psyr_1139

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,287,508 + Psyr_1135 0.36 -0.8
1,287,508 + Psyr_1135 0.36 -0.5
1,287,509 - Psyr_1135 0.36 -0.9
1,287,607 - Psyr_1135 0.46 -0.1
1,287,706 + Psyr_1135 0.56 +0.6
1,287,706 + Psyr_1135 0.56 +0.1
1,287,706 + Psyr_1135 0.56 -1.8
1,287,706 + Psyr_1135 0.56 +0.5
1,287,706 + Psyr_1135 0.56 -0.3
1,287,706 + Psyr_1135 0.56 -0.4
1,287,707 - Psyr_1135 0.56 -0.4
1,287,707 - Psyr_1135 0.56 -0.1
1,287,707 - Psyr_1135 0.56 +0.2
1,287,707 - Psyr_1135 0.56 +0.3
1,287,707 - Psyr_1135 0.56 -0.5
1,287,707 - Psyr_1135 0.56 +1.1
1,287,707 - Psyr_1135 0.56 +0.7
1,287,707 - Psyr_1135 0.56 -0.4
1,287,801 - Psyr_1135 0.65 -1.5
1,288,000 + Psyr_1135 0.85 -0.6
1,288,000 + Psyr_1135 0.85 -0.3
1,288,001 - Psyr_1135 0.85 +0.7
1,288,001 - Psyr_1135 0.85 -0.1
1,288,001 - Psyr_1135 0.85 +1.1
1,288,138 + +0.4
1,288,139 - -0.4
1,288,181 + +0.5
1,288,182 - -0.4
1,288,186 + -0.2
1,288,186 + +0.3
1,288,186 + +0.9
1,288,186 + -0.8
1,288,186 + +0.5
1,288,186 + -1.4
1,288,186 + -0.2
1,288,186 + +0.7
1,288,186 + +0.0
1,288,186 + +1.1
1,288,186 + +0.4
1,288,187 - -1.4
1,288,187 - +0.1
1,288,187 - +2.2
1,288,187 - -0.1
1,288,187 - -0.3
1,288,187 - +0.4
1,288,187 - -0.6
1,288,187 - -1.5
1,288,187 - +0.8
1,288,187 - -0.6
1,288,187 - -0.1
1,288,187 - -0.2
1,288,187 - +1.8
1,288,187 - -0.4
1,288,187 - +0.1
1,288,187 - +2.3
1,288,510 + -0.1
1,288,678 + Psyr_1137 0.26 -1.1
1,288,752 + Psyr_1137 0.36 -1.6
1,288,752 + Psyr_1137 0.36 -0.4
1,288,752 + Psyr_1137 0.36 -1.0
1,288,753 - Psyr_1137 0.36 -0.8
1,288,753 - Psyr_1137 0.36 -0.4
1,288,805 + Psyr_1137 0.43 -0.2
1,288,916 - Psyr_1137 0.57 -0.8
1,288,945 + Psyr_1137 0.61 +0.2
1,288,945 + Psyr_1137 0.61 -1.2
1,288,945 + Psyr_1137 0.61 -0.8
1,288,946 - Psyr_1137 0.61 +1.1
1,288,946 - Psyr_1137 0.61 +1.2
1,288,946 - Psyr_1137 0.61 -0.6
1,288,946 - Psyr_1137 0.61 -2.0
1,288,996 + Psyr_1137 0.68 -1.6
1,288,996 + Psyr_1137 0.68 -0.9
1,288,996 + Psyr_1137 0.68 -0.2
1,288,996 + Psyr_1137 0.68 -0.6
1,288,997 - Psyr_1137 0.68 -0.5
1,288,997 - Psyr_1137 0.68 -0.8
1,288,997 - Psyr_1137 0.68 +0.7
1,288,997 - Psyr_1137 0.68 -0.6
1,288,997 - Psyr_1137 0.68 -0.1
1,289,030 + Psyr_1137 0.72 -0.2
1,289,031 - Psyr_1137 0.73 -0.8
1,289,181 + +0.9
1,289,238 + -0.5
1,289,239 - -1.4
1,289,263 - +1.4
1,289,385 + -0.6
1,289,470 + Psyr_1138 0.25 -0.8
1,289,471 - Psyr_1138 0.25 +2.8
1,289,904 + +0.6
1,289,904 + +1.0
1,289,904 + +0.0
1,289,904 + +1.0
1,289,904 + -0.8
1,289,904 + -1.3
1,289,905 - -0.6
1,289,905 - -0.5
1,289,905 - -0.5
1,289,905 - -0.6
1,289,905 - -1.9
1,289,905 - +0.2
1,289,905 - +0.2
1,289,905 - +0.5
1,290,032 + Psyr_1139 0.17 +0.5
1,290,032 + Psyr_1139 0.17 +0.1
1,290,032 + Psyr_1139 0.17 +1.4
1,290,032 + Psyr_1139 0.17 +0.9
1,290,032 + Psyr_1139 0.17 -0.3
1,290,033 - Psyr_1139 0.17 +1.5
1,290,033 - Psyr_1139 0.17 -2.1
1,290,054 + Psyr_1139 0.19 -0.3
1,290,138 + Psyr_1139 0.29 +1.2
1,290,219 + Psyr_1139 0.38 +2.1
1,290,219 + Psyr_1139 0.38 -0.4
1,290,219 + Psyr_1139 0.38 -0.1
1,290,219 + Psyr_1139 0.38 -1.4
1,290,220 - Psyr_1139 0.38 -1.4
1,290,220 - Psyr_1139 0.38 -0.4

Or see this region's nucleotide sequence