Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0959

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0958 and Psyr_0959 overlap by 4 nucleotidesPsyr_0959 and Psyr_0960 overlap by 4 nucleotidesPsyr_0960 and Psyr_0961 overlap by 8 nucleotides Psyr_0958: Psyr_0958 - amine oxidase, flavin-containing, at 1,092,194 to 1,093,441 _0958 Psyr_0959: Psyr_0959 - Short-chain dehydrogenase/reductase SDR, at 1,093,438 to 1,094,226 _0959 Psyr_0960: Psyr_0960 - conserved hypothetical protein, at 1,094,223 to 1,094,645 _0960 Psyr_0961: Psyr_0961 - deoxyribodipyrimidine photo-lyase type I, at 1,094,638 to 1,096,086 _0961 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.510 kb on + strand, within Psyr_0958at 1092.589 kb on - strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.181 kb on + strand, within Psyr_0958at 1093.229 kb on + strand, within Psyr_0958at 1093.330 kb on + strandat 1093.331 kb on - strandat 1093.392 kb on + strandat 1093.392 kb on + strandat 1093.393 kb on - strandat 1093.599 kb on + strand, within Psyr_0959at 1093.599 kb on + strand, within Psyr_0959at 1093.799 kb on + strand, within Psyr_0959at 1093.800 kb on - strand, within Psyr_0959at 1093.877 kb on + strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1094.281 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.321 kb on - strand, within Psyr_0960at 1094.398 kb on + strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960at 1094.485 kb on + strand, within Psyr_0960at 1094.486 kb on - strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.796 kb on + strand, within Psyr_0961at 1094.797 kb on - strand, within Psyr_0961at 1094.883 kb on + strand, within Psyr_0961at 1094.884 kb on - strand, within Psyr_0961at 1094.891 kb on + strand, within Psyr_0961at 1094.891 kb on + strand, within Psyr_0961at 1094.892 kb on - strand, within Psyr_0961

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,092,468 + Psyr_0958 0.22 +0.9
1,092,468 + Psyr_0958 0.22 -0.3
1,092,468 + Psyr_0958 0.22 -0.8
1,092,468 + Psyr_0958 0.22 +0.0
1,092,468 + Psyr_0958 0.22 -1.8
1,092,468 + Psyr_0958 0.22 +1.5
1,092,469 - Psyr_0958 0.22 -1.3
1,092,469 - Psyr_0958 0.22 -0.6
1,092,469 - Psyr_0958 0.22 +0.2
1,092,469 - Psyr_0958 0.22 -0.1
1,092,469 - Psyr_0958 0.22 +0.7
1,092,469 - Psyr_0958 0.22 +0.5
1,092,469 - Psyr_0958 0.22 -0.7
1,092,469 - Psyr_0958 0.22 +0.2
1,092,469 - Psyr_0958 0.22 +1.0
1,092,510 + Psyr_0958 0.25 -0.6
1,092,589 - Psyr_0958 0.32 -0.2
1,092,801 + Psyr_0958 0.49 -0.1
1,092,801 + Psyr_0958 0.49 +0.4
1,092,801 + Psyr_0958 0.49 -1.5
1,092,801 + Psyr_0958 0.49 +0.4
1,092,801 + Psyr_0958 0.49 -0.0
1,092,802 - Psyr_0958 0.49 -0.4
1,092,957 + Psyr_0958 0.61 +1.2
1,092,957 + Psyr_0958 0.61 -0.6
1,092,957 + Psyr_0958 0.61 +2.3
1,092,957 + Psyr_0958 0.61 -0.3
1,092,957 + Psyr_0958 0.61 -2.9
1,092,957 + Psyr_0958 0.61 -1.4
1,092,957 + Psyr_0958 0.61 -2.4
1,092,957 + Psyr_0958 0.61 +0.4
1,092,957 + Psyr_0958 0.61 -2.4
1,092,957 + Psyr_0958 0.61 +2.7
1,092,958 - Psyr_0958 0.61 +0.0
1,092,958 - Psyr_0958 0.61 +1.2
1,092,958 - Psyr_0958 0.61 +1.0
1,092,958 - Psyr_0958 0.61 +0.7
1,092,958 - Psyr_0958 0.61 -1.4
1,092,958 - Psyr_0958 0.61 +0.2
1,092,958 - Psyr_0958 0.61 -0.8
1,093,153 + Psyr_0958 0.77 -2.0
1,093,153 + Psyr_0958 0.77 -0.2
1,093,154 - Psyr_0958 0.77 +0.3
1,093,154 - Psyr_0958 0.77 -1.6
1,093,155 + Psyr_0958 0.77 -0.7
1,093,155 + Psyr_0958 0.77 +1.9
1,093,155 + Psyr_0958 0.77 -0.7
1,093,155 + Psyr_0958 0.77 -0.5
1,093,155 + Psyr_0958 0.77 +1.9
1,093,156 - Psyr_0958 0.77 -0.4
1,093,156 - Psyr_0958 0.77 +0.0
1,093,181 + Psyr_0958 0.79 +3.4
1,093,229 + Psyr_0958 0.83 +0.0
1,093,330 + +1.0
1,093,331 - +0.8
1,093,392 + -0.0
1,093,392 + -0.9
1,093,393 - -0.0
1,093,599 + Psyr_0959 0.20 +0.8
1,093,599 + Psyr_0959 0.20 -0.6
1,093,799 + Psyr_0959 0.46 +0.2
1,093,800 - Psyr_0959 0.46 -0.4
1,093,877 + Psyr_0959 0.56 -1.8
1,093,878 - Psyr_0959 0.56 -0.9
1,093,878 - Psyr_0959 0.56 -1.0
1,093,949 + Psyr_0959 0.65 -1.7
1,093,949 + Psyr_0959 0.65 -0.3
1,093,949 + Psyr_0959 0.65 -1.4
1,093,949 + Psyr_0959 0.65 -0.1
1,093,949 + Psyr_0959 0.65 -1.3
1,093,950 - Psyr_0959 0.65 +0.1
1,093,950 - Psyr_0959 0.65 -0.3
1,093,950 - Psyr_0959 0.65 -0.7
1,094,281 + Psyr_0960 0.14 +0.2
1,094,305 + Psyr_0960 0.19 +1.8
1,094,305 + Psyr_0960 0.19 +0.8
1,094,321 - Psyr_0960 0.23 +0.0
1,094,398 + Psyr_0960 0.41 +0.3
1,094,399 - Psyr_0960 0.42 +0.2
1,094,399 - Psyr_0960 0.42 +0.8
1,094,399 - Psyr_0960 0.42 +0.5
1,094,399 - Psyr_0960 0.42 +1.0
1,094,419 + Psyr_0960 0.46 -0.6
1,094,419 + Psyr_0960 0.46 -2.8
1,094,420 - Psyr_0960 0.47 -0.8
1,094,420 - Psyr_0960 0.47 +0.5
1,094,485 + Psyr_0960 0.62 +2.3
1,094,486 - Psyr_0960 0.62 +1.0
1,094,566 + Psyr_0960 0.81 +0.7
1,094,566 + Psyr_0960 0.81 -1.2
1,094,566 + Psyr_0960 0.81 +1.6
1,094,567 - Psyr_0960 0.81 -0.4
1,094,567 - Psyr_0960 0.81 +1.0
1,094,567 - Psyr_0960 0.81 +0.0
1,094,796 + Psyr_0961 0.11 +0.4
1,094,797 - Psyr_0961 0.11 -0.3
1,094,883 + Psyr_0961 0.17 +0.4
1,094,884 - Psyr_0961 0.17 +2.8
1,094,891 + Psyr_0961 0.17 -0.9
1,094,891 + Psyr_0961 0.17 -0.8
1,094,892 - Psyr_0961 0.18 -0.4

Or see this region's nucleotide sequence