Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0426

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0425 and Psyr_0426 overlap by 4 nucleotidesPsyr_0426 and Psyr_0427 overlap by 4 nucleotidesPsyr_0427 and Psyr_0428 overlap by 4 nucleotides Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146 _0425 Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625 _0426 Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356 _0427 Psyr_0428: Psyr_0428 - Monooxygenase, FAD-binding protein, at 466,353 to 467,600 _0428 Position (kb) 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 464.239 kb on - strand, within Psyr_0425at 464.239 kb on - strand, within Psyr_0425at 464.305 kb on + strand, within Psyr_0425at 464.495 kb on + strand, within Psyr_0425at 464.695 kb on + strand, within Psyr_0425at 464.695 kb on + strand, within Psyr_0425at 464.696 kb on - strand, within Psyr_0425at 465.136 kb on + strandat 465.137 kb on - strandat 465.137 kb on - strandat 465.173 kb on - strandat 465.180 kb on + strandat 465.180 kb on + strandat 465.180 kb on + strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.228 kb on + strand, within Psyr_0426at 465.614 kb on + strandat 465.758 kb on + strand, within Psyr_0427at 465.758 kb on + strand, within Psyr_0427at 465.759 kb on - strand, within Psyr_0427at 465.759 kb on - strand, within Psyr_0427at 465.818 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.888 kb on - strand, within Psyr_0427at 465.918 kb on - strand, within Psyr_0427at 465.918 kb on - strand, within Psyr_0427at 466.066 kb on + strand, within Psyr_0427at 466.287 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.328 kb on + strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.329 kb on - strandat 466.442 kb on - strandat 466.517 kb on + strand, within Psyr_0428at 466.517 kb on + strand, within Psyr_0428at 466.518 kb on - strand, within Psyr_0428at 466.540 kb on + strand, within Psyr_0428at 466.541 kb on - strand, within Psyr_0428

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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464,239 - Psyr_0425 0.24 -1.7
464,239 - Psyr_0425 0.24 -0.2
464,305 + Psyr_0425 0.30 -1.0
464,495 + Psyr_0425 0.46 -0.6
464,695 + Psyr_0425 0.62 +1.7
464,695 + Psyr_0425 0.62 +0.3
464,696 - Psyr_0425 0.62 -1.6
465,136 + +0.6
465,137 - -0.9
465,137 - +0.1
465,173 - +0.7
465,180 + +0.1
465,180 + -1.2
465,180 + +0.1
465,181 - -0.8
465,181 - -0.4
465,181 - -0.5
465,181 - -0.2
465,181 - +1.1
465,228 + Psyr_0426 0.18 +1.0
465,614 + +0.4
465,758 + Psyr_0427 0.19 -1.2
465,758 + Psyr_0427 0.19 +1.4
465,759 - Psyr_0427 0.19 -0.6
465,759 - Psyr_0427 0.19 -2.0
465,818 + Psyr_0427 0.27 -0.6
465,887 + Psyr_0427 0.36 -0.4
465,887 + Psyr_0427 0.36 -0.1
465,887 + Psyr_0427 0.36 +0.4
465,887 + Psyr_0427 0.36 -0.1
465,887 + Psyr_0427 0.36 +0.1
465,887 + Psyr_0427 0.36 -0.4
465,887 + Psyr_0427 0.36 +2.1
465,887 + Psyr_0427 0.36 -0.3
465,887 + Psyr_0427 0.36 +2.1
465,887 + Psyr_0427 0.36 -0.1
465,887 + Psyr_0427 0.36 -0.0
465,888 - Psyr_0427 0.36 -1.0
465,918 - Psyr_0427 0.40 +0.7
465,918 - Psyr_0427 0.40 -0.0
466,066 + Psyr_0427 0.60 -1.0
466,287 + -0.9
466,328 + -0.8
466,328 + -0.9
466,328 + +0.4
466,328 + +0.9
466,328 + -2.8
466,328 + +0.8
466,328 + -0.6
466,328 + +2.6
466,329 - +1.6
466,329 - -0.4
466,329 - +1.1
466,329 - +1.6
466,329 - -0.2
466,329 - +0.7
466,329 - -3.5
466,329 - -0.1
466,442 - -1.3
466,517 + Psyr_0428 0.13 -0.3
466,517 + Psyr_0428 0.13 +0.2
466,518 - Psyr_0428 0.13 +0.3
466,540 + Psyr_0428 0.15 +2.5
466,541 - Psyr_0428 0.15 -1.0

Or see this region's nucleotide sequence