Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0405 and Psyr_0406 overlap by 4 nucleotides Psyr_0406 and Psyr_0407 overlap by 4 nucleotides Psyr_0407 and Psyr_0408 are separated by 4 nucleotides Psyr_0408 and Psyr_0409 are separated by 114 nucleotides
Psyr_0405: Psyr_0405 - Pilus assembly protein, PilO, at 435,260 to 435,883
_0405
Psyr_0406: Psyr_0406 - Pilus assembly protein, PilQ, at 435,880 to 436,407
_0406
Psyr_0407: Psyr_0407 - type II and III secretion system protein:NolW-like protein:NolW-like protein, at 436,404 to 438,560
_0407
Psyr_0408: Psyr_0408 - shikimate kinase, at 438,565 to 439,083
_0408
Psyr_0409: Psyr_0409 - 3-dehydroquinate synthase, at 439,198 to 440,301
_0409
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 435.512 kb on + strand, within Psyr_0405 at 435.513 kb on - strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.680 kb on + strand, within Psyr_0405 at 435.681 kb on - strand, within Psyr_0405 at 435.852 kb on - strand at 435.858 kb on - strand at 435.858 kb on - strand at 436.048 kb on + strand, within Psyr_0406 at 436.048 kb on + strand, within Psyr_0406 at 436.048 kb on + strand, within Psyr_0406 at 436.048 kb on + strand, within Psyr_0406 at 436.049 kb on - strand, within Psyr_0406 at 436.049 kb on - strand, within Psyr_0406 at 436.049 kb on - strand, within Psyr_0406 at 436.276 kb on + strand, within Psyr_0406 at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.424 kb on + strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.425 kb on - strand at 436.489 kb on + strand at 436.618 kb on - strand at 436.665 kb on - strand, within Psyr_0407 at 436.729 kb on + strand, within Psyr_0407 at 437.202 kb on + strand, within Psyr_0407 at 437.295 kb on + strand, within Psyr_0407 at 437.295 kb on + strand, within Psyr_0407 at 437.296 kb on - strand, within Psyr_0407 at 437.296 kb on - strand, within Psyr_0407 at 437.397 kb on - strand, within Psyr_0407 at 437.765 kb on + strand, within Psyr_0407 at 437.838 kb on + strand, within Psyr_0407 at 437.839 kb on - strand, within Psyr_0407 at 437.874 kb on - strand, within Psyr_0407 at 437.907 kb on + strand, within Psyr_0407 at 437.907 kb on + strand, within Psyr_0407 at 437.908 kb on - strand, within Psyr_0407 at 437.921 kb on + strand, within Psyr_0407 at 438.294 kb on + strand, within Psyr_0407 at 438.401 kb on + strand at 438.410 kb on + strand at 438.410 kb on + strand at 438.410 kb on + strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.446 kb on - strand at 438.450 kb on + strand at 438.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 435,512 + Psyr_0405 0.40 +0.9 435,513 - Psyr_0405 0.41 +0.3 435,680 + Psyr_0405 0.67 +1.3 435,680 + Psyr_0405 0.67 -0.1 435,680 + Psyr_0405 0.67 -0.7 435,680 + Psyr_0405 0.67 -0.7 435,681 - Psyr_0405 0.67 +0.1 435,852 - -0.4 435,858 - +0.1 435,858 - -0.6 436,048 + Psyr_0406 0.32 -0.1 436,048 + Psyr_0406 0.32 +0.7 436,048 + Psyr_0406 0.32 +0.3 436,048 + Psyr_0406 0.32 +0.2 436,049 - Psyr_0406 0.32 +0.8 436,049 - Psyr_0406 0.32 +1.9 436,049 - Psyr_0406 0.32 +1.0 436,276 + Psyr_0406 0.75 +1.3 436,424 + +0.7 436,424 + +0.8 436,424 + -0.4 436,424 + -0.4 436,424 + +0.7 436,424 + +0.5 436,424 + +0.1 436,424 + -1.0 436,424 + -0.6 436,424 + +0.1 436,424 + +0.1 436,424 + +0.5 436,424 + +0.1 436,424 + +0.5 436,424 + +1.6 436,425 - +0.7 436,425 - +0.1 436,425 - +2.0 436,425 - +0.2 436,425 - -0.8 436,425 - +0.7 436,425 - +0.6 436,425 - +0.3 436,425 - +1.3 436,425 - -1.1 436,489 + -0.4 436,618 - -3.9 436,665 - Psyr_0407 0.12 -0.3 436,729 + Psyr_0407 0.15 -0.3 437,202 + Psyr_0407 0.37 -1.9 437,295 + Psyr_0407 0.41 +0.8 437,295 + Psyr_0407 0.41 +0.1 437,296 - Psyr_0407 0.41 -0.3 437,296 - Psyr_0407 0.41 -2.0 437,397 - Psyr_0407 0.46 +0.2 437,765 + Psyr_0407 0.63 +0.0 437,838 + Psyr_0407 0.66 +0.1 437,839 - Psyr_0407 0.67 -0.7 437,874 - Psyr_0407 0.68 +0.4 437,907 + Psyr_0407 0.70 -1.6 437,907 + Psyr_0407 0.70 +0.5 437,908 - Psyr_0407 0.70 -1.0 437,921 + Psyr_0407 0.70 -1.2 438,294 + Psyr_0407 0.88 -0.4 438,401 + -1.2 438,410 + -1.4 438,410 + +2.1 438,410 + +1.9 438,411 - -1.3 438,411 - -1.2 438,411 - +0.1 438,411 - +0.5 438,445 + +0.7 438,445 + +0.9 438,445 + -0.6 438,445 + +0.1 438,445 + +1.3 438,446 - -2.4 438,450 + -0.4 438,578 + -0.7
Or see this region's nucleotide sequence