Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27000

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
6,024,543	-				+2.2
6,024,569	-				+1.7
6,024,587	+		PFLU_RS26995	0.11	+0.4
6,024,587	+		PFLU_RS26995	0.11	+1.6
6,024,587	+		PFLU_RS26995	0.11	+1.5
6,024,587	+		PFLU_RS26995	0.11	-1.2
6,024,588	-		PFLU_RS26995	0.11	-1.7
6,024,588	-		PFLU_RS26995	0.11	+1.2
6,024,588	-		PFLU_RS26995	0.11	+1.8
6,024,588	-		PFLU_RS26995	0.11	+1.1
6,024,588	-		PFLU_RS26995	0.11	-0.2
6,024,588	-		PFLU_RS26995	0.11	+1.9
6,024,655	+		PFLU_RS26995	0.18	+0.6
6,024,655	+		PFLU_RS26995	0.18	+0.4
6,024,656	-		PFLU_RS26995	0.18	-2.6
6,024,704	+		PFLU_RS26995	0.23	-0.5
6,024,704	+		PFLU_RS26995	0.23	-0.1
6,024,704	+		PFLU_RS26995	0.23	+1.4
6,024,704	+		PFLU_RS26995	0.23	+0.1
6,024,704	+		PFLU_RS26995	0.23	-1.2
6,024,704	+		PFLU_RS26995	0.23	+6.0
6,024,704	+		PFLU_RS26995	0.23	-2.3
6,024,704	+		PFLU_RS26995	0.23	-0.4
6,024,705	-		PFLU_RS26995	0.23	+2.2
6,024,705	-		PFLU_RS26995	0.23	-1.7
6,024,705	-		PFLU_RS26995	0.23	+4.7
6,024,705	-		PFLU_RS26995	0.23	-2.5
6,024,705	-		PFLU_RS26995	0.23	+1.0
6,024,705	-		PFLU_RS26995	0.23	-0.7
6,024,705	-		PFLU_RS26995	0.23	+0.4
6,024,705	-		PFLU_RS26995	0.23	-0.6
6,024,705	-		PFLU_RS26995	0.23	-0.2
6,024,705	-		PFLU_RS26995	0.23	-2.7
6,024,705	-		PFLU_RS26995	0.23	+1.9
6,024,705	-		PFLU_RS26995	0.23	+3.9
6,024,831	-		PFLU_RS26995	0.36	-1.5
6,024,831	-		PFLU_RS26995	0.36	+0.3
6,025,216	-		PFLU_RS26995	0.76	-0.8
6,025,221	+		PFLU_RS26995	0.77	+0.3
6,025,411	+				-0.7
6,025,411	+				+4.3
6,025,411	+				-2.3
6,025,411	+				-1.2
6,025,411	+				+0.5
6,025,411	+				+0.2
6,025,412	-				+0.6
6,025,412	-				-0.1
6,025,412	-				-1.2
6,025,412	-				+0.0
6,025,412	-				-0.9
6,025,412	-				+0.3
6,025,412	-				+1.8
6,025,412	-				-2.6
6,025,412	-				-1.5
6,025,412	-				+0.9
6,025,462	-				-0.1
6,025,462	-				+2.2
6,025,462	-				-1.7
6,025,462	-				-0.2
6,025,462	-				+0.7
6,025,462	-				-1.4
6,025,462	-				-0.9
6,025,462	-				-2.8
6,025,482	+				-0.5
6,025,482	+				-0.6
6,025,482	+				+1.8
6,025,482	+				-0.4
6,025,482	+				+1.5
6,025,482	+				-1.4
6,025,482	+				-0.9
6,025,482	+				-0.9
6,025,483	-				+0.7
6,025,483	-				-0.7
6,025,483	-				+1.6
6,025,483	-				-0.6
6,025,483	-				-1.1
6,025,483	-				+1.6
6,025,483	-				-0.9
6,025,499	+				-0.7
6,025,499	+				-1.0
6,025,500	-				-0.9
6,025,500	-				-0.6
6,025,500	-				-1.8
6,025,500	-				+1.2
6,025,500	-				+0.9
6,025,500	-				-1.7
6,025,500	-				-1.2
6,025,500	-				-1.9
6,025,504	+				+1.2
6,025,504	+				-0.0
6,025,504	+				+0.8
6,025,504	+				-2.1
6,025,504	+				+4.8
6,025,504	+				+0.3
6,025,504	+				-0.6
6,025,504	+				-0.5
6,025,504	+				+2.6
6,025,504	+				-1.6
6,025,504	+				-2.4
6,025,504	+				-0.1
6,025,504	+				-1.0
6,025,505	-				+2.9
6,025,505	-				-2.5
6,025,505	-				-2.3
6,025,505	-				+1.1
6,025,505	-				+1.0
6,025,505	-				+2.7
6,025,505	-				+0.7
6,025,505	-				-0.3
6,025,505	-				+1.4
6,025,505	-				-0.9
6,025,505	-				+0.1
6,025,561	+				-1.6
6,025,561	+				+2.9
6,025,581	+				+1.5
6,025,581	+				-0.5
6,025,581	+				+1.7
6,025,582	-				-0.8
6,025,582	-				+0.5
6,025,582	-				+0.8
6,025,582	-				-2.7
6,025,754	+		PFLU_RS27000	0.38	+0.8
6,025,755	-		PFLU_RS27000	0.39	-0.4
6,025,755	-		PFLU_RS27000	0.39	-1.6
6,025,755	-		PFLU_RS27000	0.39	+1.1
6,025,755	-		PFLU_RS27000	0.39	+0.9
6,025,755	-		PFLU_RS27000	0.39	-0.6
6,025,837	+		PFLU_RS27000	0.53	+2.7
6,025,837	+		PFLU_RS27000	0.53	-0.4
6,025,838	-		PFLU_RS27000	0.53	-0.2
6,025,838	-		PFLU_RS27000	0.53	-1.7
6,025,870	+		PFLU_RS27000	0.59	+0.1
6,025,870	+		PFLU_RS27000	0.59	-1.5
6,025,870	+		PFLU_RS27000	0.59	-1.2
6,025,895	+		PFLU_RS27000	0.63	-0.8
6,025,895	+		PFLU_RS27000	0.63	+1.6
6,025,895	+		PFLU_RS27000	0.63	+0.1
6,025,895	+		PFLU_RS27000	0.63	-0.3
6,025,895	+		PFLU_RS27000	0.63	-0.9
6,025,895	+		PFLU_RS27000	0.63	+2.4
6,025,895	+		PFLU_RS27000	0.63	+2.4
6,025,895	+		PFLU_RS27000	0.63	-1.0
6,025,896	-		PFLU_RS27000	0.64	+0.4
6,025,896	-		PFLU_RS27000	0.64	-1.5
6,025,896	-		PFLU_RS27000	0.64	+3.2
6,025,896	-		PFLU_RS27000	0.64	+1.2
6,025,896	-		PFLU_RS27000	0.64	-2.3
6,025,896	-		PFLU_RS27000	0.64	+1.6
6,025,896	-		PFLU_RS27000	0.64	+1.4
6,025,932	+		PFLU_RS27000	0.70	-1.2
6,025,932	+		PFLU_RS27000	0.70	-1.6
6,025,932	+		PFLU_RS27000	0.70	+1.2
6,025,933	-		PFLU_RS27000	0.70	-0.2
6,025,933	-		PFLU_RS27000	0.70	+0.1
6,025,933	-		PFLU_RS27000	0.70	-1.7
6,025,933	-		PFLU_RS27000	0.70	+2.8
6,025,982	+		PFLU_RS27000	0.79	+0.6
6,026,022	+		PFLU_RS27000	0.86	+0.0
6,026,022	+		PFLU_RS27000	0.86	+1.4
6,026,022	+		PFLU_RS27000	0.86	+0.7
6,026,022	+		PFLU_RS27000	0.86	+0.4
6,026,022	+		PFLU_RS27000	0.86	+0.6
6,026,022	+		PFLU_RS27000	0.86	+1.3
6,026,022	+		PFLU_RS27000	0.86	+0.8
6,026,022	+		PFLU_RS27000	0.86	-2.1
6,026,022	+		PFLU_RS27000	0.86	+0.0
6,026,022	+		PFLU_RS27000	0.86	+2.4
6,026,022	+		PFLU_RS27000	0.86	+1.1
6,026,022	+		PFLU_RS27000	0.86	-0.6
6,026,022	+		PFLU_RS27000	0.86	+0.4
6,026,022	+		PFLU_RS27000	0.86	+2.1
6,026,022	+		PFLU_RS27000	0.86	+4.5
6,026,022	+		PFLU_RS27000	0.86	+2.5
6,026,022	+		PFLU_RS27000	0.86	+0.5
6,026,022	+		PFLU_RS27000	0.86	+0.0
6,026,022	+		PFLU_RS27000	0.86	+2.0
6,026,022	+		PFLU_RS27000	0.86	-0.4
6,026,022	+		PFLU_RS27000	0.86	-0.8
6,026,022	+		PFLU_RS27000	0.86	+1.2
6,026,022	+		PFLU_RS27000	0.86	-1.5
6,026,022	+		PFLU_RS27000	0.86	-0.7
6,026,022	+		PFLU_RS27000	0.86	+1.3
6,026,022	+		PFLU_RS27000	0.86	-0.7
6,026,022	+		PFLU_RS27000	0.86	+0.2
6,026,022	+		PFLU_RS27000	0.86	-1.4
6,026,022	+		PFLU_RS27000	0.86	-1.3
6,026,022	+		PFLU_RS27000	0.86	-0.6
6,026,022	+		PFLU_RS27000	0.86	-0.6
6,026,022	+		PFLU_RS27000	0.86	+1.1
6,026,022	+		PFLU_RS27000	0.86	-0.1
6,026,022	+		PFLU_RS27000	0.86	-0.5
6,026,022	+		PFLU_RS27000	0.86	+0.4
6,026,022	+		PFLU_RS27000	0.86	+0.0
6,026,023	-		PFLU_RS27000	0.86	-1.4
6,026,023	-		PFLU_RS27000	0.86	+0.2
6,026,023	-		PFLU_RS27000	0.86	+0.8
6,026,023	-		PFLU_RS27000	0.86	+2.5
6,026,023	-		PFLU_RS27000	0.86	-1.9
6,026,023	-		PFLU_RS27000	0.86	+5.3
6,026,023	-		PFLU_RS27000	0.86	+0.9
6,026,023	-		PFLU_RS27000	0.86	-1.3
6,026,023	-		PFLU_RS27000	0.86	-0.2
6,026,023	-		PFLU_RS27000	0.86	+1.5
6,026,023	-		PFLU_RS27000	0.86	-1.6
6,026,023	-		PFLU_RS27000	0.86	-0.4
6,026,023	-		PFLU_RS27000	0.86	-1.4
6,026,023	-		PFLU_RS27000	0.86	+0.5
6,026,023	-		PFLU_RS27000	0.86	+1.2
6,026,023	-		PFLU_RS27000	0.86	+0.5
6,026,023	-		PFLU_RS27000	0.86	-0.3
6,026,023	-		PFLU_RS27000	0.86	-2.1
6,026,023	-		PFLU_RS27000	0.86	+0.4
6,026,023	-		PFLU_RS27000	0.86	-0.4
6,026,023	-		PFLU_RS27000	0.86	+0.7
6,026,023	-		PFLU_RS27000	0.86	+0.0
6,026,023	-		PFLU_RS27000	0.86	+0.4
6,026,023	-		PFLU_RS27000	0.86	-0.1
6,026,023	-		PFLU_RS27000	0.86	-0.9
6,026,023	-		PFLU_RS27000	0.86	-0.5
6,026,023	-		PFLU_RS27000	0.86	+2.4
6,026,023	-		PFLU_RS27000	0.86	+3.3
6,026,023	-		PFLU_RS27000	0.86	-0.1
6,026,023	-		PFLU_RS27000	0.86	-2.5
6,026,023	-		PFLU_RS27000	0.86	-0.2
6,026,024	+		PFLU_RS27000	0.86	-0.9
6,026,024	+		PFLU_RS27000	0.86	+0.7
6,026,024	+		PFLU_RS27000	0.86	+1.1
6,026,024	+		PFLU_RS27000	0.86	+1.5
6,026,024	+		PFLU_RS27000	0.86	-1.2
6,026,024	+		PFLU_RS27000	0.86	+0.5
6,026,024	+		PFLU_RS27000	0.86	+0.9
6,026,024	+		PFLU_RS27000	0.86	+1.3
6,026,024	+		PFLU_RS27000	0.86	+1.2
6,026,025	-		PFLU_RS27000	0.87	+2.3
6,026,025	-		PFLU_RS27000	0.87	+0.7
6,026,025	-		PFLU_RS27000	0.87	+0.7
6,026,025	-		PFLU_RS27000	0.87	+2.7
6,026,025	-		PFLU_RS27000	0.87	-2.6
6,026,025	-		PFLU_RS27000	0.87	+2.9
6,026,025	-		PFLU_RS27000	0.87	-0.1
6,026,025	-		PFLU_RS27000	0.87	-1.3
6,026,025	-		PFLU_RS27000	0.87	+0.8
6,026,025	-		PFLU_RS27000	0.87	+1.4
6,026,025	-		PFLU_RS27000	0.87	-1.7
6,026,073	+				+0.3
6,026,073	+				-1.9
6,026,073	+				+2.9
6,026,073	+				-0.1
6,026,073	+				+3.0
6,026,074	-				+0.8
6,026,074	-				-0.8
6,026,074	-				-1.6
6,026,074	-				-1.2
6,026,074	-				-0.6
6,026,074	-				-1.8
6,026,119	+				+0.1
6,026,119	+				-0.5
6,026,120	-				-0.4
6,026,120	-				-1.9
6,026,120	-				+1.5
6,026,120	-				+0.8
6,026,163	+				+0.3
6,026,163	+				-1.2
6,026,164	-				-2.4
6,026,164	-				+1.6
6,026,164	-				+1.2
6,026,164	-				+0.2
6,026,212	+		PFLU_RS27005	0.12	+0.6
6,026,212	+		PFLU_RS27005	0.12	-2.3
6,026,212	+		PFLU_RS27005	0.12	+3.3
6,026,212	+		PFLU_RS27005	0.12	-0.9
6,026,212	+		PFLU_RS27005	0.12	-1.5
6,026,212	+		PFLU_RS27005	0.12	-1.9
6,026,212	+		PFLU_RS27005	0.12	-1.7
6,026,213	-		PFLU_RS27005	0.12	+0.3
6,026,213	-		PFLU_RS27005	0.12	-0.9
6,026,213	-		PFLU_RS27005	0.12	+1.3
6,026,213	-		PFLU_RS27005	0.12	-0.8
6,026,213	-		PFLU_RS27005	0.12	-0.2
6,026,213	-		PFLU_RS27005	0.12	-0.0
6,026,213	-		PFLU_RS27005	0.12	-0.5
6,026,213	-		PFLU_RS27005	0.12	+0.8
6,026,213	-		PFLU_RS27005	0.12	-2.0
6,026,213	-		PFLU_RS27005	0.12	-1.0
6,026,268	+		PFLU_RS27005	0.19	+0.0
6,026,268	+		PFLU_RS27005	0.19	-0.3
6,026,269	-		PFLU_RS27005	0.19	+1.0
6,026,269	-		PFLU_RS27005	0.19	-0.3
6,026,269	-		PFLU_RS27005	0.19	-2.1
6,026,269	-		PFLU_RS27005	0.19	-2.2
6,026,326	+		PFLU_RS27005	0.27	-1.7
6,026,326	+		PFLU_RS27005	0.27	+1.5
6,026,326	+		PFLU_RS27005	0.27	-0.1
6,026,326	+		PFLU_RS27005	0.27	-0.1
6,026,326	+		PFLU_RS27005	0.27	-0.7
6,026,326	+		PFLU_RS27005	0.27	+2.0
6,026,326	+		PFLU_RS27005	0.27	-2.1
6,026,326	+		PFLU_RS27005	0.27	+0.4
6,026,327	-		PFLU_RS27005	0.27	-1.9
6,026,327	-		PFLU_RS27005	0.27	+0.4
6,026,327	-		PFLU_RS27005	0.27	-2.2
6,026,327	-		PFLU_RS27005	0.27	+1.2
6,026,327	-		PFLU_RS27005	0.27	-1.7
6,026,377	+		PFLU_RS27005	0.34	-1.3
6,026,377	+		PFLU_RS27005	0.34	-0.5
6,026,377	+		PFLU_RS27005	0.34	+0.2
6,026,377	+		PFLU_RS27005	0.34	-1.3
6,026,377	+		PFLU_RS27005	0.34	-1.2
6,026,377	+		PFLU_RS27005	0.34	-2.4
6,026,377	+		PFLU_RS27005	0.34	-2.5
6,026,377	+		PFLU_RS27005	0.34	+1.6
6,026,377	+		PFLU_RS27005	0.34	+2.1
6,026,377	+		PFLU_RS27005	0.34	+0.2
6,026,378	-		PFLU_RS27005	0.34	+0.4
6,026,378	-		PFLU_RS27005	0.34	+0.2
6,026,378	-		PFLU_RS27005	0.34	+1.5
6,026,378	-		PFLU_RS27005	0.34	-0.7
6,026,378	-		PFLU_RS27005	0.34	+0.5
6,026,378	-		PFLU_RS27005	0.34	-2.3
6,026,378	-		PFLU_RS27005	0.34	-0.9
6,026,380	+		PFLU_RS27005	0.34	-1.4
6,026,380	+		PFLU_RS27005	0.34	-0.8
6,026,380	+		PFLU_RS27005	0.34	-0.9
6,026,380	+		PFLU_RS27005	0.34	-0.2
6,026,381	-		PFLU_RS27005	0.34	-1.5
6,026,381	-		PFLU_RS27005	0.34	-0.4
6,026,381	-		PFLU_RS27005	0.34	+0.5
6,026,549	-		PFLU_RS27005	0.56	-1.1
6,026,549	-		PFLU_RS27005	0.56	-0.2
6,026,670	-		PFLU_RS27005	0.72	-1.1
6,026,860	+				-1.6
6,026,860	+				-0.5
6,026,861	-				-2.8
6,026,861	-				+0.0
6,026,861	-				-0.9
6,026,861	-				-1.6
6,026,861	-				+4.1
6,026,861	-				-1.6
6,026,861	-				+0.7
6,026,918	+				-0.9
6,026,918	+				-0.2
6,026,918	+				-0.9
6,026,919	-				-1.9
6,026,919	-				-1.3
6,026,919	-				-2.9
6,026,919	-				+1.2
6,026,989	+				+0.4
6,026,989	+				+1.1
6,026,989	+				-1.2
6,026,989	+				+0.2
6,026,990	-				+1.6
6,026,990	-				+1.7
6,026,990	-				-2.8
6,026,990	-				-0.5
6,026,990	-				-2.3
6,026,990	-				+1.6
6,026,990	-				+3.2
6,026,990	-				-2.2
6,026,990	-				-0.4
6,026,990	-				-1.0