Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09905

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
2,183,448	+		PFLU_RS09900	0.81	+0.1
2,183,448	+		PFLU_RS09900	0.81	-1.0
2,183,474	-		PFLU_RS09900	0.83	+0.2
2,183,478	+		PFLU_RS09900	0.83	-1.3
2,183,484	+		PFLU_RS09900	0.84	+0.9
2,183,573	+		PFLU_RS09900	0.90	-1.6
2,183,580	-				+1.3
2,183,616	+				-0.1
2,183,617	-				-0.1
2,183,619	-				+0.2
2,183,684	+				+0.7
2,183,684	+				-1.7
2,183,685	-				+1.1
2,183,765	-				-1.3
2,183,786	-		PFLU_RS31510	0.30	-0.5
2,183,786	-		PFLU_RS31510	0.30	+1.5
2,183,786	-		PFLU_RS31510	0.30	+1.0
2,184,033	+				-0.3
2,184,052	-		PFLU_RS30610	0.12	-0.9
2,184,052	-		PFLU_RS30610	0.12	-0.9
2,184,097	+		PFLU_RS30610	0.25	-2.0
2,184,098	-		PFLU_RS30610	0.25	-0.5
2,184,098	-		PFLU_RS30610	0.25	-2.4
2,184,185	-		PFLU_RS30610	0.50	-2.2
2,184,252	-		PFLU_RS30610	0.69	-1.0
2,184,253	+		PFLU_RS30610	0.69	-1.2
2,184,274	+		PFLU_RS30610	0.75	-0.8
2,184,275	-		PFLU_RS30610	0.75	+0.8
2,184,280	+		PFLU_RS30610	0.77	+1.1
2,184,281	-		PFLU_RS30610	0.77	+1.2
2,184,369	-				-1.7
2,184,393	-				-1.1
2,184,421	+				-0.1
2,184,424	+				+0.1
2,184,424	+				-0.8
2,184,425	-				+2.7
2,184,482	+				-0.0
2,184,528	+		PFLU_RS09905	0.12	+1.6
2,184,528	+		PFLU_RS09905	0.12	-0.2
2,184,529	-		PFLU_RS09905	0.12	-0.7
2,184,529	-		PFLU_RS09905	0.12	-0.9
2,184,529	-		PFLU_RS09905	0.12	-0.4
2,184,531	+		PFLU_RS09905	0.12	-2.4
2,184,549	+		PFLU_RS09905	0.14	+0.4
2,184,550	-		PFLU_RS09905	0.14	-1.0
2,184,601	-		PFLU_RS09905	0.20	-0.6
2,184,728	-		PFLU_RS09905	0.34	-0.2
2,184,743	+		PFLU_RS09905	0.35	+1.3
2,184,809	+		PFLU_RS09905	0.42	+1.2
2,184,809	+		PFLU_RS09905	0.42	+0.4
2,184,809	+		PFLU_RS09905	0.42	-1.3
2,184,809	+		PFLU_RS09905	0.42	+3.2
2,184,809	+		PFLU_RS09905	0.42	+0.7
2,184,810	-		PFLU_RS09905	0.43	-0.6
2,184,816	+		PFLU_RS09905	0.43	-1.4
2,184,816	+		PFLU_RS09905	0.43	-0.6
2,184,816	+		PFLU_RS09905	0.43	-0.6
2,184,816	+		PFLU_RS09905	0.43	-0.1
2,184,816	+		PFLU_RS09905	0.43	-1.6
2,184,816	+		PFLU_RS09905	0.43	-1.0
2,184,817	-		PFLU_RS09905	0.43	-1.0
2,184,817	-		PFLU_RS09905	0.43	-2.2
2,184,817	-		PFLU_RS09905	0.43	-1.5
2,184,817	-		PFLU_RS09905	0.43	-2.1
2,184,817	-		PFLU_RS09905	0.43	+1.8
2,184,829	-		PFLU_RS09905	0.45	-1.4
2,184,853	+		PFLU_RS09905	0.47	+3.9
2,184,883	+		PFLU_RS09905	0.51	+0.3
2,184,883	+		PFLU_RS09905	0.51	+2.0
2,184,883	+		PFLU_RS09905	0.51	+0.3
2,184,883	+		PFLU_RS09905	0.51	-1.2
2,184,883	+		PFLU_RS09905	0.51	-1.7
2,184,883	+		PFLU_RS09905	0.51	-1.6
2,184,883	+		PFLU_RS09905	0.51	-0.0
2,184,884	-		PFLU_RS09905	0.51	-1.6
2,184,884	-		PFLU_RS09905	0.51	+0.5
2,184,884	-		PFLU_RS09905	0.51	+1.2
2,184,884	-		PFLU_RS09905	0.51	-0.0
2,184,915	+		PFLU_RS09905	0.54	+0.6
2,184,916	-		PFLU_RS09905	0.54	-0.5
2,184,980	+		PFLU_RS09905	0.61	+0.9
2,185,005	+		PFLU_RS09905	0.64	+3.1
2,185,005	+		PFLU_RS09905	0.64	-0.7
2,185,005	+		PFLU_RS09905	0.64	-1.2
2,185,005	+		PFLU_RS09905	0.64	+0.7
2,185,005	+		PFLU_RS09905	0.64	+2.0
2,185,006	-		PFLU_RS09905	0.64	+2.0
2,185,006	-		PFLU_RS09905	0.64	-0.6
2,185,006	-		PFLU_RS09905	0.64	-0.6
2,185,007	+		PFLU_RS09905	0.64	+2.5
2,185,007	+		PFLU_RS09905	0.64	+2.1
2,185,008	-		PFLU_RS09905	0.64	-1.0
2,185,008	-		PFLU_RS09905	0.64	+0.9
2,185,008	-		PFLU_RS09905	0.64	-2.3
2,185,008	-		PFLU_RS09905	0.64	+2.2
2,185,021	+		PFLU_RS09905	0.66	+0.0
2,185,021	+		PFLU_RS09905	0.66	-0.1
2,185,021	+		PFLU_RS09905	0.66	-2.5
2,185,022	-		PFLU_RS09905	0.66	-2.3
2,185,022	-		PFLU_RS09905	0.66	-1.2
2,185,022	-		PFLU_RS09905	0.66	-0.3
2,185,022	-		PFLU_RS09905	0.66	+1.9
2,185,022	-		PFLU_RS09905	0.66	+0.8
2,185,022	-		PFLU_RS09905	0.66	-0.4
2,185,294	+				+0.2
2,185,294	+				+0.4
2,185,295	-				+1.9
2,185,295	-				-0.3
2,185,295	-				-1.0
2,185,390	-				-1.3
2,185,447	+				-1.1
2,185,447	+				+1.8
2,185,448	-				-3.2
2,185,483	+				+1.5
2,185,492	-				+0.1
2,185,523	+				+1.7
2,185,523	+				-0.7
2,185,536	+				+1.9
2,185,536	+				-0.1
2,185,538	+				+0.8
2,185,555	+				-0.3
2,185,556	-				+0.9
2,185,560	+				-1.2
2,185,566	+				+0.0
2,185,601	-				-1.0
2,185,601	-				-1.2
2,185,629	+		PFLU_RS09910	0.10	+0.9
2,185,745	+		PFLU_RS09910	0.19	-1.4
2,185,745	+		PFLU_RS09910	0.19	-0.4
2,185,788	-		PFLU_RS09910	0.22	+0.2
2,185,793	+		PFLU_RS09910	0.23	+2.4
2,185,910	-		PFLU_RS09910	0.32	+1.5
2,185,910	-		PFLU_RS09910	0.32	-1.9
2,185,918	+		PFLU_RS09910	0.32	-3.0
2,185,919	-		PFLU_RS09910	0.32	-0.1
2,185,919	-		PFLU_RS09910	0.32	-0.2
2,185,919	-		PFLU_RS09910	0.32	-1.7
2,185,919	-		PFLU_RS09910	0.32	-0.8
2,185,924	+		PFLU_RS09910	0.33	-1.0
2,185,924	+		PFLU_RS09910	0.33	+1.0
2,185,925	-		PFLU_RS09910	0.33	+0.1
2,185,925	-		PFLU_RS09910	0.33	+3.3
2,185,925	-		PFLU_RS09910	0.33	-1.5
2,185,939	-		PFLU_RS09910	0.34	-0.7
2,185,939	-		PFLU_RS09910	0.34	+2.3
2,185,988	+		PFLU_RS09910	0.38	+2.6
2,185,989	-		PFLU_RS09910	0.38	-1.1
2,186,071	+		PFLU_RS09910	0.44	-2.1
2,186,071	+		PFLU_RS09910	0.44	-1.2
2,186,071	+		PFLU_RS09910	0.44	+0.4
2,186,072	-		PFLU_RS09910	0.44	-0.5
2,186,072	-		PFLU_RS09910	0.44	+2.6
2,186,072	-		PFLU_RS09910	0.44	-1.3
2,186,072	-		PFLU_RS09910	0.44	-0.4
2,186,072	-		PFLU_RS09910	0.44	+0.3
2,186,079	+		PFLU_RS09910	0.45	+0.3
2,186,079	+		PFLU_RS09910	0.45	+1.0
2,186,079	+		PFLU_RS09910	0.45	-0.4
2,186,079	+		PFLU_RS09910	0.45	+0.6
2,186,079	+		PFLU_RS09910	0.45	-1.5
2,186,079	+		PFLU_RS09910	0.45	-0.3
2,186,079	+		PFLU_RS09910	0.45	-0.5
2,186,080	-		PFLU_RS09910	0.45	-0.8
2,186,090	+		PFLU_RS09910	0.46	-0.0
2,186,106	-		PFLU_RS09910	0.47	-1.6
2,186,106	-		PFLU_RS09910	0.47	+0.2
2,186,117	+		PFLU_RS09910	0.48	+0.9
2,186,117	+		PFLU_RS09910	0.48	+1.0
2,186,117	+		PFLU_RS09910	0.48	-0.0
2,186,118	-		PFLU_RS09910	0.48	+0.8
2,186,118	-		PFLU_RS09910	0.48	-1.4
2,186,118	-		PFLU_RS09910	0.48	-0.9
2,186,118	-		PFLU_RS09910	0.48	-0.8
2,186,118	-		PFLU_RS09910	0.48	-2.2
2,186,118	-		PFLU_RS09910	0.48	+3.0
2,186,184	+		PFLU_RS09910	0.53	-2.1
2,186,225	+		PFLU_RS09910	0.56	+0.6
2,186,226	-		PFLU_RS09910	0.56	-1.3
2,186,246	-		PFLU_RS09910	0.58	-1.5
2,186,249	+		PFLU_RS09910	0.58	-0.8
2,186,250	-		PFLU_RS09910	0.58	-2.8
2,186,287	+		PFLU_RS09910	0.61	+0.6
2,186,288	-		PFLU_RS09910	0.61	-2.2
2,186,313	+		PFLU_RS09910	0.63	+0.0