Experiment: Nitrate/ lactate media with Nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0784 and Psest_0785 are separated by 108 nucleotides Psest_0785 and Psest_0786 are separated by 324 nucleotides
Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993
_0784
Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049
_0785
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 857.182 kb on + strand, within Psest_0784 at 857.183 kb on - strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.564 kb on - strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.027 kb on + strand at 858.027 kb on + strand at 858.104 kb on - strand at 858.104 kb on - strand at 858.152 kb on + strand at 858.353 kb on - strand, within Psest_0785 at 858.353 kb on - strand, within Psest_0785 at 858.457 kb on + strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 859.077 kb on + strand at 859.078 kb on - strand at 859.384 kb on + strand at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM remove 857,182 + Psest_0784 0.41 -1.0 857,183 - Psest_0784 0.41 -0.6 857,560 + Psest_0784 0.68 -0.2 857,560 + Psest_0784 0.68 -0.3 857,560 + Psest_0784 0.68 -1.1 857,561 - Psest_0784 0.69 -0.8 857,561 - Psest_0784 0.69 +2.0 857,561 - Psest_0784 0.69 +0.1 857,561 - Psest_0784 0.69 +0.2 857,564 - Psest_0784 0.69 +0.2 857,721 + Psest_0784 0.80 -1.1 857,721 + Psest_0784 0.80 +0.6 857,721 + Psest_0784 0.80 -1.0 857,842 + Psest_0784 0.89 +0.4 857,842 + Psest_0784 0.89 +0.2 858,020 - -0.8 858,020 - -2.2 858,020 - +0.1 858,020 - -0.3 858,021 + +0.5 858,021 + +0.7 858,021 + -0.0 858,021 + -1.4 858,021 + +0.1 858,022 - -0.5 858,022 - -0.0 858,022 - -1.6 858,022 - -2.4 858,022 - +1.5 858,022 - +0.2 858,027 + +0.5 858,027 + -0.8 858,104 - +0.2 858,104 - +0.7 858,152 + -0.2 858,353 - Psest_0785 0.26 -0.7 858,353 - Psest_0785 0.26 -0.2 858,457 + Psest_0785 0.37 -0.8 858,581 - Psest_0785 0.51 -2.6 858,581 - Psest_0785 0.51 -0.2 858,962 - -0.0 858,962 - +3.5 858,962 - -0.2 858,962 - -0.8 859,077 + -0.6 859,078 - +0.2 859,384 + +1.0 859,821 + Psest_0786 0.44 +0.2 859,821 + Psest_0786 0.44 +0.4 859,821 + Psest_0786 0.44 -1.9 859,821 + Psest_0786 0.44 -1.0 859,821 + Psest_0786 0.44 +0.5 859,822 - Psest_0786 0.44 -1.3 859,822 - Psest_0786 0.44 +1.0 859,822 - Psest_0786 0.44 +0.7
Or see this region's nucleotide sequence