Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4411

Experiment: Nitrate/ lactate media with Nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate/ lactate media with Nitrate 20mM
8,487	+		Psest_4409	0.55	+2.1
8,487	+		Psest_4409	0.55	+1.5
8,488	-		Psest_4409	0.56	+1.5
8,488	-		Psest_4409	0.56	+0.1
8,488	-		Psest_4409	0.56	+2.1
8,488	-		Psest_4409	0.56	-0.1
8,488	-		Psest_4409	0.56	+1.3
8,488	-		Psest_4409	0.56	-0.6
8,488	-		Psest_4409	0.56	+0.8
8,488	-		Psest_4409	0.56	-0.2
8,488	-		Psest_4409	0.56	+0.3
8,488	-		Psest_4409	0.56	+1.8
8,488	-		Psest_4409	0.56	+3.1
8,488	-		Psest_4409	0.56	-0.1
8,488	-		Psest_4409	0.56	-0.2
8,535	+		Psest_4409	0.63	+0.8
8,535	+		Psest_4409	0.63	+2.5
8,536	-		Psest_4409	0.63	+1.3
8,536	-		Psest_4409	0.63	+0.7
8,536	-		Psest_4409	0.63	-0.5
8,536	-		Psest_4409	0.63	+0.8
8,552	+		Psest_4409	0.66	+1.1
8,552	+		Psest_4409	0.66	-0.7
8,552	+		Psest_4409	0.66	-0.1
8,552	+		Psest_4409	0.66	+3.1
8,552	+		Psest_4409	0.66	-0.7
8,552	+		Psest_4409	0.66	+4.1
8,552	+		Psest_4409	0.66	+2.1
8,552	+		Psest_4409	0.66	+0.5
8,552	+		Psest_4409	0.66	+1.3
8,552	+		Psest_4409	0.66	+1.5
8,552	+		Psest_4409	0.66	+0.8
8,552	+		Psest_4409	0.66	-0.3
8,552	+		Psest_4409	0.66	-0.8
8,552	+		Psest_4409	0.66	+2.1
8,553	-		Psest_4409	0.66	+0.3
8,553	-		Psest_4409	0.66	+0.8
8,553	-		Psest_4409	0.66	-1.0
8,553	-		Psest_4409	0.66	-1.1
8,553	-		Psest_4409	0.66	+2.1
8,553	-		Psest_4409	0.66	+0.8
8,553	-		Psest_4409	0.66	-0.2
8,553	-		Psest_4409	0.66	-0.3
8,553	-		Psest_4409	0.66	+1.5
8,553	-		Psest_4409	0.66	+1.5
8,553	-		Psest_4409	0.66	+0.5
8,553	-		Psest_4409	0.66	-1.3
8,553	-		Psest_4409	0.66	+1.5
8,553	-		Psest_4409	0.66	+1.5
8,553	-		Psest_4409	0.66	+0.8
8,627	-		Psest_4409	0.78	+0.2
8,627	-		Psest_4409	0.78	+1.5
8,627	-		Psest_4409	0.78	+1.5
8,627	-		Psest_4409	0.78	+0.9
8,627	-		Psest_4409	0.78	+1.5
8,714	+				+0.8
8,714	+				+1.1
8,715	-				+1.5
8,715	-				-0.7
8,761	+				+2.1
8,761	+				-0.3
8,762	-				+1.2
8,762	-				+0.8
8,762	-				+1.5
8,820	+				+3.1
8,820	+				+2.1
8,820	+				-1.2
8,820	+				+1.1
8,820	+				+0.9
8,820	+				+0.5
8,820	+				+1.1
8,820	+				+0.9
8,820	+				+0.5
8,820	+				+1.1
8,820	+				+1.5
8,820	+				+3.1
8,820	+				+3.1
8,820	+				+0.8
8,820	+				+1.5
8,820	+				+0.1
8,820	+				-0.7
8,820	+				-0.2
8,820	+				+0.8
8,820	+				+1.3
8,820	+				+0.5
8,820	+				+0.5
8,820	+				+0.8
8,820	+				+1.5
8,820	+				+0.9
8,820	+				+0.8
8,820	+				+0.8
8,821	-				+0.3
8,821	-				+0.5
8,821	-				+0.9
8,821	-				+0.6
8,821	-				-1.0
8,821	-				+1.8
8,821	-				-1.1
8,821	-				+1.1
8,821	-				+0.1
8,821	-				+1.5
8,821	-				+0.4
8,821	-				+1.5
8,821	-				+0.9
8,924	-		Psest_4410	0.20	+0.3
8,950	+		Psest_4410	0.24	-0.6
8,950	+		Psest_4410	0.24	-0.7
8,950	+		Psest_4410	0.24	+3.1
8,951	-		Psest_4410	0.24	+2.1
8,951	-		Psest_4410	0.24	+1.2
8,951	-		Psest_4410	0.24	+2.1
9,037	+		Psest_4410	0.37	+2.1
9,037	+		Psest_4410	0.37	+0.3
9,037	+		Psest_4410	0.37	+1.5
9,037	+		Psest_4410	0.37	-0.9
9,038	-		Psest_4410	0.37	+1.1
9,038	-		Psest_4410	0.37	-0.2
9,038	-		Psest_4410	0.37	+0.3
9,038	-		Psest_4410	0.37	+1.8
9,174	+		Psest_4410	0.58	+1.1
9,174	+		Psest_4410	0.58	+0.1
9,174	+		Psest_4410	0.58	+0.4
9,174	+		Psest_4410	0.58	+0.7
9,174	+		Psest_4410	0.58	+0.5
9,174	+		Psest_4410	0.58	+2.9
9,174	+		Psest_4410	0.58	+2.1
9,174	+		Psest_4410	0.58	+0.8
9,174	+		Psest_4410	0.58	-0.8
9,174	+		Psest_4410	0.58	+1.1
9,175	-		Psest_4410	0.58	+0.4
9,175	-		Psest_4410	0.58	+2.1
9,175	-		Psest_4410	0.58	+0.4
9,175	-		Psest_4410	0.58	-1.9
9,175	-		Psest_4410	0.58	+1.3
9,175	-		Psest_4410	0.58	+1.5
9,175	-		Psest_4410	0.58	+1.1
9,175	-		Psest_4410	0.58	-0.1
9,175	-		Psest_4410	0.58	+1.1
9,175	-		Psest_4410	0.58	+1.7
9,175	-		Psest_4410	0.58	+0.3
9,175	-		Psest_4410	0.58	+1.1
9,175	-		Psest_4410	0.58	+2.1
9,175	-		Psest_4410	0.58	+1.5
9,175	-		Psest_4410	0.58	+1.5
9,237	+		Psest_4410	0.67	-1.6
9,237	+		Psest_4410	0.67	+1.5
9,237	+		Psest_4410	0.67	+1.3
9,237	+		Psest_4410	0.67	+1.1
9,237	+		Psest_4410	0.67	+1.1
9,237	+		Psest_4410	0.67	+1.1
9,237	+		Psest_4410	0.67	+1.5
9,237	+		Psest_4410	0.67	+0.8
9,237	+		Psest_4410	0.67	+0.5
9,237	+		Psest_4410	0.67	+3.1
9,237	+		Psest_4410	0.67	-0.3
9,238	-		Psest_4410	0.67	+1.1
9,238	-		Psest_4410	0.67	+0.1
9,238	-		Psest_4410	0.67	+1.1
9,238	-		Psest_4410	0.67	+1.1
9,238	-		Psest_4410	0.67	+0.3
9,238	-		Psest_4410	0.67	+1.5
9,238	-		Psest_4410	0.67	+0.5
9,238	-		Psest_4410	0.67	+0.3
9,238	-		Psest_4410	0.67	+2.1
9,238	-		Psest_4410	0.67	+0.8
9,238	-		Psest_4410	0.67	+0.5
9,238	-		Psest_4410	0.67	+0.1
9,238	-		Psest_4410	0.67	+0.8
9,254	-		Psest_4410	0.70	+0.9
9,270	+		Psest_4410	0.72	-0.3
9,270	+		Psest_4410	0.72	+3.1
9,270	+		Psest_4410	0.72	+0.8
9,270	+		Psest_4410	0.72	+1.3
9,270	+		Psest_4410	0.72	+2.1
9,270	+		Psest_4410	0.72	-0.6
9,271	-		Psest_4410	0.72	+2.1
9,271	-		Psest_4410	0.72	+2.1
9,271	-		Psest_4410	0.72	+2.1
9,271	-		Psest_4410	0.72	+0.1
9,271	-		Psest_4410	0.72	+0.3
9,271	-		Psest_4410	0.72	-0.2
9,271	-		Psest_4410	0.72	+0.7
9,271	-		Psest_4410	0.72	+0.8
9,271	-		Psest_4410	0.72	-0.1
9,271	-		Psest_4410	0.72	-0.1
9,271	-		Psest_4410	0.72	+0.5
9,338	+		Psest_4410	0.82	+0.1
9,369	+		Psest_4410	0.87	+0.9
9,369	+		Psest_4410	0.87	+1.1
9,369	+		Psest_4410	0.87	+1.5
9,369	+		Psest_4410	0.87	-0.3
9,369	+		Psest_4410	0.87	+1.1
9,369	+		Psest_4410	0.87	+0.4
9,369	+		Psest_4410	0.87	+1.1
9,369	+		Psest_4410	0.87	+0.5
9,370	-		Psest_4410	0.87	+0.5
9,409	+				-0.1
9,409	+				+2.1
9,410	-				-0.9
9,410	-				+0.0
9,410	-				-0.1
9,487	+				+0.0
9,487	+				+3.1
9,487	+				+1.9
9,487	+				-0.5
9,487	+				+0.1
9,487	+				+0.7
9,487	+				+4.1
9,487	+				+1.9
9,487	+				+1.1
9,487	+				+0.5
9,487	+				+1.1
9,487	+				+1.1
9,488	-				+1.5
9,488	-				+2.1
9,488	-				+1.1
9,488	-				+1.5
9,488	-				+0.7
9,488	-				+3.1
9,488	-				+1.3
9,488	-				+1.5
9,488	-				+2.1
9,488	-				+1.5
9,488	-				-0.1
9,488	-				+1.5
9,488	-				+1.5
9,488	-				+0.5
9,517	+		Psest_4411	0.16	+0.1
9,518	-		Psest_4411	0.16	+1.7
9,529	+		Psest_4411	0.19	+1.1
9,529	+		Psest_4411	0.19	+2.1
9,529	+		Psest_4411	0.19	+1.9
9,529	+		Psest_4411	0.19	+1.1
9,529	+		Psest_4411	0.19	+3.1
9,530	-		Psest_4411	0.19	+3.1
9,530	-		Psest_4411	0.19	+0.3
9,530	-		Psest_4411	0.19	+1.5
9,530	-		Psest_4411	0.19	+1.5
9,530	-		Psest_4411	0.19	+0.8
9,530	-		Psest_4411	0.19	+2.1
9,530	-		Psest_4411	0.19	-1.2
9,530	-		Psest_4411	0.19	+0.0
9,530	-		Psest_4411	0.19	+0.7
9,530	-		Psest_4411	0.19	+2.5
9,574	+		Psest_4411	0.30	+0.5
9,574	+		Psest_4411	0.30	+2.5
9,574	+		Psest_4411	0.30	+0.8
9,574	+		Psest_4411	0.30	+0.5
9,574	+		Psest_4411	0.30	+0.5
9,574	+		Psest_4411	0.30	+1.1
9,574	+		Psest_4411	0.30	+2.1
9,575	-		Psest_4411	0.30	+0.3
9,575	-		Psest_4411	0.30	+0.9
9,575	-		Psest_4411	0.30	+1.0
9,575	-		Psest_4411	0.30	+0.8
9,656	+		Psest_4411	0.50	+0.8
9,657	-		Psest_4411	0.50	+0.3
9,657	-		Psest_4411	0.50	+2.1
9,657	-		Psest_4411	0.50	+0.5
9,854	-				-0.2
9,854	-				+2.7
9,854	-				+2.1
9,854	-				+2.1
9,854	-				+1.7
9,854	-				+0.8
9,854	-				+2.1
9,854	-				-0.2