Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2422 and Psest_2423 are separated by 3 nucleotides Psest_2423 and Psest_2424 are separated by 119 nucleotides Psest_2424 and Psest_2425 overlap by 11 nucleotides
Psest_2422: Psest_2422 - oxidoreductase alpha (molybdopterin) subunit, at 2,584,574 to 2,586,922
_2422
Psest_2423: Psest_2423 - Uncharacterized conserved protein, at 2,586,926 to 2,587,315
_2423
Psest_2424: Psest_2424 - K+ transport systems, NAD-binding component, at 2,587,435 to 2,588,139
_2424
Psest_2425: Psest_2425 - Trk-type K+ transport systems, membrane components, at 2,588,129 to 2,589,457
_2425
Position (kb)
2586
2587
2588 Strain fitness (log2 ratio)
-2
-1
0
1 at 2586.326 kb on + strand, within Psest_2422 at 2586.326 kb on + strand, within Psest_2422 at 2586.327 kb on - strand, within Psest_2422 at 2586.327 kb on - strand, within Psest_2422 at 2586.410 kb on + strand, within Psest_2422 at 2586.410 kb on + strand, within Psest_2422 at 2586.445 kb on + strand, within Psest_2422 at 2586.446 kb on - strand, within Psest_2422 at 2586.569 kb on + strand, within Psest_2422 at 2586.570 kb on - strand, within Psest_2422 at 2586.570 kb on - strand, within Psest_2422 at 2586.570 kb on - strand, within Psest_2422 at 2586.570 kb on - strand, within Psest_2422 at 2586.570 kb on - strand, within Psest_2422 at 2586.585 kb on - strand, within Psest_2422 at 2586.585 kb on - strand, within Psest_2422 at 2586.783 kb on - strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.880 kb on + strand at 2586.881 kb on - strand at 2587.023 kb on + strand, within Psest_2423 at 2587.023 kb on + strand, within Psest_2423 at 2587.023 kb on + strand, within Psest_2423 at 2587.024 kb on - strand, within Psest_2423 at 2587.024 kb on - strand, within Psest_2423 at 2587.194 kb on + strand, within Psest_2423 at 2587.195 kb on - strand, within Psest_2423 at 2587.195 kb on - strand, within Psest_2423 at 2587.195 kb on - strand, within Psest_2423 at 2587.195 kb on - strand, within Psest_2423 at 2587.398 kb on - strand at 2587.420 kb on + strand at 2587.775 kb on - strand, within Psest_2424 at 2587.981 kb on - strand, within Psest_2424 at 2588.080 kb on + strand at 2588.081 kb on - strand at 2588.229 kb on + strand at 2588.229 kb on + strand at 2588.229 kb on + strand at 2588.229 kb on + strand at 2588.229 kb on + strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand at 2588.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 2,586,326 + Psest_2422 0.75 -0.8 2,586,326 + Psest_2422 0.75 -0.0 2,586,327 - Psest_2422 0.75 -0.0 2,586,327 - Psest_2422 0.75 -0.7 2,586,410 + Psest_2422 0.78 -0.6 2,586,410 + Psest_2422 0.78 +0.5 2,586,445 + Psest_2422 0.80 +0.1 2,586,446 - Psest_2422 0.80 -0.8 2,586,569 + Psest_2422 0.85 +0.9 2,586,570 - Psest_2422 0.85 +0.3 2,586,570 - Psest_2422 0.85 +0.7 2,586,570 - Psest_2422 0.85 +0.6 2,586,570 - Psest_2422 0.85 +0.3 2,586,570 - Psest_2422 0.85 -0.4 2,586,585 - Psest_2422 0.86 -0.0 2,586,585 - Psest_2422 0.86 -0.6 2,586,783 - +0.1 2,586,880 + +0.1 2,586,880 + +0.6 2,586,880 + +1.3 2,586,880 + +0.5 2,586,880 + +0.5 2,586,880 + +0.6 2,586,880 + +1.0 2,586,881 - +1.3 2,587,023 + Psest_2423 0.25 +0.3 2,587,023 + Psest_2423 0.25 -1.0 2,587,023 + Psest_2423 0.25 -1.1 2,587,024 - Psest_2423 0.25 +0.0 2,587,024 - Psest_2423 0.25 -2.2 2,587,194 + Psest_2423 0.69 -0.3 2,587,195 - Psest_2423 0.69 -1.0 2,587,195 - Psest_2423 0.69 -1.3 2,587,195 - Psest_2423 0.69 -0.3 2,587,195 - Psest_2423 0.69 -1.1 2,587,398 - +0.1 2,587,420 + -0.5 2,587,775 - Psest_2424 0.48 -0.3 2,587,981 - Psest_2424 0.77 +0.3 2,588,080 + +0.9 2,588,081 - -0.2 2,588,229 + -1.0 2,588,229 + -1.2 2,588,229 + +0.6 2,588,229 + +0.3 2,588,229 + -0.7 2,588,230 - +0.6 2,588,230 - +0.8 2,588,230 - +0.2 2,588,230 - -0.2 2,588,230 - -0.2 2,588,230 - -0.2 2,588,230 - +0.3 2,588,230 - -0.7 2,588,230 - +0.7
Or see this region's nucleotide sequence