Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2423

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2422 and Psest_2423 are separated by 3 nucleotidesPsest_2423 and Psest_2424 are separated by 119 nucleotidesPsest_2424 and Psest_2425 overlap by 11 nucleotides Psest_2422: Psest_2422 - oxidoreductase alpha (molybdopterin) subunit, at 2,584,574 to 2,586,922 _2422 Psest_2423: Psest_2423 - Uncharacterized conserved protein, at 2,586,926 to 2,587,315 _2423 Psest_2424: Psest_2424 - K+ transport systems, NAD-binding component, at 2,587,435 to 2,588,139 _2424 Psest_2425: Psest_2425 - Trk-type K+ transport systems, membrane components, at 2,588,129 to 2,589,457 _2425 Position (kb) 2586 2587 2588Strain fitness (log2 ratio) -2 -1 0 1at 2586.326 kb on + strand, within Psest_2422at 2586.326 kb on + strand, within Psest_2422at 2586.327 kb on - strand, within Psest_2422at 2586.327 kb on - strand, within Psest_2422at 2586.410 kb on + strand, within Psest_2422at 2586.410 kb on + strand, within Psest_2422at 2586.445 kb on + strand, within Psest_2422at 2586.446 kb on - strand, within Psest_2422at 2586.569 kb on + strand, within Psest_2422at 2586.570 kb on - strand, within Psest_2422at 2586.570 kb on - strand, within Psest_2422at 2586.570 kb on - strand, within Psest_2422at 2586.570 kb on - strand, within Psest_2422at 2586.570 kb on - strand, within Psest_2422at 2586.585 kb on - strand, within Psest_2422at 2586.585 kb on - strand, within Psest_2422at 2586.783 kb on - strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.880 kb on + strandat 2586.881 kb on - strandat 2587.023 kb on + strand, within Psest_2423at 2587.023 kb on + strand, within Psest_2423at 2587.023 kb on + strand, within Psest_2423at 2587.024 kb on - strand, within Psest_2423at 2587.024 kb on - strand, within Psest_2423at 2587.194 kb on + strand, within Psest_2423at 2587.195 kb on - strand, within Psest_2423at 2587.195 kb on - strand, within Psest_2423at 2587.195 kb on - strand, within Psest_2423at 2587.195 kb on - strand, within Psest_2423at 2587.398 kb on - strandat 2587.420 kb on + strandat 2587.775 kb on - strand, within Psest_2424at 2587.981 kb on - strand, within Psest_2424at 2588.080 kb on + strandat 2588.081 kb on - strandat 2588.229 kb on + strandat 2588.229 kb on + strandat 2588.229 kb on + strandat 2588.229 kb on + strandat 2588.229 kb on + strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strandat 2588.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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2,586,326 + Psest_2422 0.75 -0.8
2,586,326 + Psest_2422 0.75 -0.0
2,586,327 - Psest_2422 0.75 -0.0
2,586,327 - Psest_2422 0.75 -0.7
2,586,410 + Psest_2422 0.78 -0.6
2,586,410 + Psest_2422 0.78 +0.5
2,586,445 + Psest_2422 0.80 +0.1
2,586,446 - Psest_2422 0.80 -0.8
2,586,569 + Psest_2422 0.85 +0.9
2,586,570 - Psest_2422 0.85 +0.3
2,586,570 - Psest_2422 0.85 +0.7
2,586,570 - Psest_2422 0.85 +0.6
2,586,570 - Psest_2422 0.85 +0.3
2,586,570 - Psest_2422 0.85 -0.4
2,586,585 - Psest_2422 0.86 -0.0
2,586,585 - Psest_2422 0.86 -0.6
2,586,783 - +0.1
2,586,880 + +0.1
2,586,880 + +0.6
2,586,880 + +1.3
2,586,880 + +0.5
2,586,880 + +0.5
2,586,880 + +0.6
2,586,880 + +1.0
2,586,881 - +1.3
2,587,023 + Psest_2423 0.25 +0.3
2,587,023 + Psest_2423 0.25 -1.0
2,587,023 + Psest_2423 0.25 -1.1
2,587,024 - Psest_2423 0.25 +0.0
2,587,024 - Psest_2423 0.25 -2.2
2,587,194 + Psest_2423 0.69 -0.3
2,587,195 - Psest_2423 0.69 -1.0
2,587,195 - Psest_2423 0.69 -1.3
2,587,195 - Psest_2423 0.69 -0.3
2,587,195 - Psest_2423 0.69 -1.1
2,587,398 - +0.1
2,587,420 + -0.5
2,587,775 - Psest_2424 0.48 -0.3
2,587,981 - Psest_2424 0.77 +0.3
2,588,080 + +0.9
2,588,081 - -0.2
2,588,229 + -1.0
2,588,229 + -1.2
2,588,229 + +0.6
2,588,229 + +0.3
2,588,229 + -0.7
2,588,230 - +0.6
2,588,230 - +0.8
2,588,230 - +0.2
2,588,230 - -0.2
2,588,230 - -0.2
2,588,230 - -0.2
2,588,230 - +0.3
2,588,230 - -0.7
2,588,230 - +0.7

Or see this region's nucleotide sequence