Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0835

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0833 and Psest_0834 are separated by 73 nucleotidesPsest_0834 and Psest_0835 are separated by 192 nucleotidesPsest_0835 and Psest_0836 are separated by 14 nucleotidesPsest_0836 and Psest_0837 overlap by 7 nucleotides Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801 _0833 Psest_0834: Psest_0834 - hypothetical protein, at 905,875 to 906,084 _0834 Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272 _0835 Psest_0836: Psest_0836 - Collagenase and related proteases, at 907,287 to 908,177 _0836 Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665 _0837 Position (kb) 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 905.873 kb on + strandat 905.873 kb on + strandat 905.874 kb on - strandat 905.874 kb on - strandat 905.874 kb on - strandat 906.254 kb on + strandat 906.267 kb on - strandat 906.267 kb on - strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.395 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.463 kb on - strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.478 kb on + strand, within Psest_0835at 906.479 kb on - strand, within Psest_0835at 906.662 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.921 kb on - strand, within Psest_0835at 907.114 kb on + strand, within Psest_0835at 907.114 kb on + strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.160 kb on - strand, within Psest_0835at 907.160 kb on - strand, within Psest_0835at 907.317 kb on + strandat 907.317 kb on + strandat 907.317 kb on + strandat 907.318 kb on - strandat 907.383 kb on + strand, within Psest_0836at 907.383 kb on + strand, within Psest_0836at 907.384 kb on - strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.645 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.171 kb on - strandat 908.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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905,873 + +1.6
905,873 + -0.4
905,874 - +0.7
905,874 - +0.6
905,874 - +2.2
906,254 + -0.2
906,267 - -0.5
906,267 - -1.8
906,349 + -0.9
906,349 + -0.4
906,349 + -0.8
906,349 + -1.3
906,349 + -1.4
906,349 + -1.1
906,349 + -1.4
906,349 + -0.3
906,349 + -1.4
906,349 + +0.3
906,349 + -1.6
906,350 - -1.8
906,350 - -0.4
906,350 - -0.3
906,350 - -1.8
906,350 - -0.8
906,350 - -0.3
906,350 - -1.3
906,350 - -1.4
906,350 - -1.2
906,350 - +1.0
906,350 - -0.0
906,350 - -2.3
906,350 - -0.2
906,350 - +0.6
906,350 - -1.7
906,395 + Psest_0835 0.12 -1.2
906,460 + Psest_0835 0.18 -1.2
906,460 + Psest_0835 0.18 -2.6
906,460 + Psest_0835 0.18 -1.9
906,460 + Psest_0835 0.18 -0.4
906,460 + Psest_0835 0.18 -1.2
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 -0.8
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 -2.9
906,460 + Psest_0835 0.18 -2.5
906,460 + Psest_0835 0.18 -1.0
906,460 + Psest_0835 0.18 -1.9
906,460 + Psest_0835 0.18 -0.8
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 -1.8
906,460 + Psest_0835 0.18 -0.8
906,460 + Psest_0835 0.18 -1.4
906,461 - Psest_0835 0.18 -1.5
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 -2.1
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 -2.1
906,461 - Psest_0835 0.18 -0.8
906,461 - Psest_0835 0.18 -1.3
906,461 - Psest_0835 0.18 -2.0
906,461 - Psest_0835 0.18 -0.6
906,461 - Psest_0835 0.18 +1.2
906,461 - Psest_0835 0.18 -2.8
906,461 - Psest_0835 0.18 +0.6
906,461 - Psest_0835 0.18 -1.4
906,461 - Psest_0835 0.18 -2.6
906,461 - Psest_0835 0.18 -2.6
906,461 - Psest_0835 0.18 -0.6
906,461 - Psest_0835 0.18 -0.8
906,461 - Psest_0835 0.18 -1.5
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -0.8
906,461 - Psest_0835 0.18 -0.9
906,461 - Psest_0835 0.18 -1.5
906,461 - Psest_0835 0.18 -0.3
906,461 - Psest_0835 0.18 -0.9
906,461 - Psest_0835 0.18 -1.0
906,461 - Psest_0835 0.18 -1.1
906,463 - Psest_0835 0.19 -0.8
906,474 + Psest_0835 0.20 -0.0
906,474 + Psest_0835 0.20 +0.6
906,475 - Psest_0835 0.20 -1.4
906,475 - Psest_0835 0.20 -2.0
906,475 - Psest_0835 0.20 -0.1
906,475 - Psest_0835 0.20 -1.0
906,475 - Psest_0835 0.20 -1.1
906,475 - Psest_0835 0.20 +0.4
906,478 + Psest_0835 0.20 -2.5
906,479 - Psest_0835 0.20 -1.0
906,662 - Psest_0835 0.39 -1.6
906,818 - Psest_0835 0.54 -0.0
906,818 - Psest_0835 0.54 -1.0
906,921 - Psest_0835 0.65 -1.0
907,114 + Psest_0835 0.84 -1.9
907,114 + Psest_0835 0.84 -0.4
907,115 - Psest_0835 0.84 -0.8
907,115 - Psest_0835 0.84 -0.5
907,115 - Psest_0835 0.84 -0.5
907,115 - Psest_0835 0.84 -2.1
907,115 - Psest_0835 0.84 -0.8
907,159 + Psest_0835 0.89 -1.0
907,159 + Psest_0835 0.89 -1.2
907,159 + Psest_0835 0.89 -1.9
907,159 + Psest_0835 0.89 -1.3
907,159 + Psest_0835 0.89 -1.0
907,159 + Psest_0835 0.89 -1.0
907,160 - Psest_0835 0.89 -1.0
907,160 - Psest_0835 0.89 -0.0
907,317 + -0.4
907,317 + -1.1
907,317 + -0.1
907,318 - -1.2
907,383 + Psest_0836 0.11 -1.6
907,383 + Psest_0836 0.11 -0.0
907,384 - Psest_0836 0.11 -0.6
907,644 + Psest_0836 0.40 -1.0
907,644 + Psest_0836 0.40 -1.2
907,644 + Psest_0836 0.40 -0.4
907,645 - Psest_0836 0.40 -1.2
907,813 - Psest_0836 0.59 -2.0
907,813 - Psest_0836 0.59 +0.6
907,813 - Psest_0836 0.59 +0.6
908,056 + Psest_0836 0.86 -2.0
908,056 + Psest_0836 0.86 -1.3
908,056 + Psest_0836 0.86 -2.2
908,056 + Psest_0836 0.86 -1.0
908,056 + Psest_0836 0.86 -0.5
908,056 + Psest_0836 0.86 -0.8
908,057 - Psest_0836 0.86 +1.0
908,057 - Psest_0836 0.86 -1.3
908,057 - Psest_0836 0.86 -1.8
908,171 - -0.9
908,171 - +0.2

Or see this region's nucleotide sequence