Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0589

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0588 and Psest_0589 overlap by 26 nucleotidesPsest_0589 and Psest_0590 are separated by 544 nucleotides Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363 _0588 Psest_0589: Psest_0589 - Uncharacterized protein conserved in bacteria, at 639,338 to 639,793 _0589 Psest_0590: Psest_0590 - hypothetical protein, at 640,338 to 642,005 _0590 Position (kb) 639 640Strain fitness (log2 ratio) -2 -1 0 1 2at 638.444 kb on - strandat 638.469 kb on + strandat 638.470 kb on - strandat 638.470 kb on - strandat 638.470 kb on - strandat 638.470 kb on - strandat 638.503 kb on + strandat 638.651 kb on + strandat 638.681 kb on + strandat 638.681 kb on + strandat 638.681 kb on + strandat 638.682 kb on - strandat 638.684 kb on + strandat 638.894 kb on + strand, within Psest_0588at 638.894 kb on + strand, within Psest_0588at 638.895 kb on - strand, within Psest_0588at 638.895 kb on - strand, within Psest_0588at 638.895 kb on - strand, within Psest_0588at 638.895 kb on - strand, within Psest_0588at 639.009 kb on + strand, within Psest_0588at 639.090 kb on + strand, within Psest_0588at 639.091 kb on - strand, within Psest_0588at 639.103 kb on + strand, within Psest_0588at 639.103 kb on + strand, within Psest_0588at 639.103 kb on + strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.104 kb on - strand, within Psest_0588at 639.185 kb on + strand, within Psest_0588at 639.185 kb on + strand, within Psest_0588at 639.186 kb on - strand, within Psest_0588at 639.196 kb on + strand, within Psest_0588at 639.197 kb on - strand, within Psest_0588at 639.197 kb on - strand, within Psest_0588at 639.233 kb on + strand, within Psest_0588at 639.233 kb on + strand, within Psest_0588at 639.234 kb on - strand, within Psest_0588at 639.234 kb on - strand, within Psest_0588at 639.234 kb on - strand, within Psest_0588at 639.234 kb on - strand, within Psest_0588at 639.353 kb on + strandat 639.354 kb on - strandat 639.354 kb on - strandat 639.354 kb on - strandat 639.354 kb on - strandat 639.465 kb on - strand, within Psest_0589at 639.465 kb on - strand, within Psest_0589at 639.504 kb on + strand, within Psest_0589at 639.536 kb on + strand, within Psest_0589at 639.537 kb on - strand, within Psest_0589at 639.537 kb on - strand, within Psest_0589at 639.537 kb on - strand, within Psest_0589at 639.537 kb on - strand, within Psest_0589at 639.557 kb on - strand, within Psest_0589at 639.601 kb on + strand, within Psest_0589at 639.601 kb on + strand, within Psest_0589at 639.602 kb on - strand, within Psest_0589at 639.602 kb on - strand, within Psest_0589at 639.608 kb on - strand, within Psest_0589at 639.609 kb on + strand, within Psest_0589at 639.609 kb on + strand, within Psest_0589at 639.609 kb on + strand, within Psest_0589at 639.609 kb on + strand, within Psest_0589at 639.609 kb on + strand, within Psest_0589at 639.610 kb on - strand, within Psest_0589at 639.610 kb on - strand, within Psest_0589at 639.610 kb on - strand, within Psest_0589at 639.638 kb on + strand, within Psest_0589at 639.639 kb on - strand, within Psest_0589at 639.716 kb on - strand, within Psest_0589at 639.720 kb on - strand, within Psest_0589at 639.735 kb on + strand, within Psest_0589at 639.740 kb on - strand, within Psest_0589at 639.780 kb on + strandat 639.798 kb on - strandat 639.798 kb on - strandat 639.798 kb on - strandat 639.856 kb on + strandat 639.857 kb on - strandat 639.857 kb on - strandat 639.881 kb on + strandat 639.931 kb on - strandat 639.940 kb on + strandat 639.957 kb on - strandat 639.957 kb on - strandat 639.967 kb on + strandat 640.011 kb on + strandat 640.025 kb on + strandat 640.025 kb on + strandat 640.026 kb on - strandat 640.030 kb on + strandat 640.031 kb on - strandat 640.033 kb on - strandat 640.128 kb on - strandat 640.145 kb on - strandat 640.145 kb on - strandat 640.156 kb on + strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.191 kb on + strandat 640.191 kb on + strandat 640.191 kb on + strandat 640.192 kb on - strandat 640.192 kb on - strandat 640.192 kb on - strandat 640.192 kb on - strandat 640.192 kb on - strandat 640.225 kb on + strandat 640.225 kb on + strandat 640.228 kb on + strandat 640.228 kb on + strandat 640.228 kb on + strandat 640.239 kb on + strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.240 kb on - strandat 640.421 kb on + strandat 640.421 kb on + strandat 640.421 kb on + strandat 640.422 kb on - strandat 640.422 kb on - strandat 640.422 kb on - strandat 640.422 kb on - strandat 640.422 kb on - strandat 640.495 kb on + strandat 640.495 kb on + strandat 640.495 kb on + strandat 640.543 kb on + strand, within Psest_0590at 640.543 kb on + strand, within Psest_0590at 640.543 kb on + strand, within Psest_0590at 640.543 kb on + strand, within Psest_0590at 640.544 kb on - strand, within Psest_0590at 640.544 kb on - strand, within Psest_0590at 640.544 kb on - strand, within Psest_0590at 640.580 kb on + strand, within Psest_0590at 640.581 kb on - strand, within Psest_0590at 640.581 kb on - strand, within Psest_0590at 640.581 kb on - strand, within Psest_0590at 640.581 kb on - strand, within Psest_0590at 640.581 kb on - strand, within Psest_0590at 640.615 kb on + strand, within Psest_0590at 640.615 kb on + strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.616 kb on - strand, within Psest_0590at 640.617 kb on + strand, within Psest_0590at 640.638 kb on + strand, within Psest_0590at 640.694 kb on + strand, within Psest_0590at 640.694 kb on + strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.695 kb on - strand, within Psest_0590at 640.727 kb on + strand, within Psest_0590at 640.784 kb on - strand, within Psest_0590

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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638,444 - -0.4
638,469 + -0.6
638,470 - +0.5
638,470 - +0.1
638,470 - -0.4
638,470 - -0.3
638,503 + +0.5
638,651 + -0.1
638,681 + +0.9
638,681 + -0.1
638,681 + +0.2
638,682 - -0.9
638,684 + +2.2
638,894 + Psest_0588 0.35 -0.2
638,894 + Psest_0588 0.35 -0.3
638,895 - Psest_0588 0.35 -0.0
638,895 - Psest_0588 0.35 -0.3
638,895 - Psest_0588 0.35 -0.2
638,895 - Psest_0588 0.35 -0.4
639,009 + Psest_0588 0.51 -0.5
639,090 + Psest_0588 0.62 +0.2
639,091 - Psest_0588 0.62 -0.4
639,103 + Psest_0588 0.64 -0.7
639,103 + Psest_0588 0.64 -1.5
639,103 + Psest_0588 0.64 -0.8
639,104 - Psest_0588 0.64 +1.6
639,104 - Psest_0588 0.64 +0.2
639,104 - Psest_0588 0.64 +0.3
639,104 - Psest_0588 0.64 +1.0
639,104 - Psest_0588 0.64 -0.4
639,104 - Psest_0588 0.64 -0.6
639,104 - Psest_0588 0.64 +2.6
639,104 - Psest_0588 0.64 +1.3
639,104 - Psest_0588 0.64 +1.0
639,185 + Psest_0588 0.75 +0.1
639,185 + Psest_0588 0.75 +0.2
639,186 - Psest_0588 0.75 +1.2
639,196 + Psest_0588 0.77 -0.0
639,197 - Psest_0588 0.77 -0.6
639,197 - Psest_0588 0.77 +1.6
639,233 + Psest_0588 0.82 +1.1
639,233 + Psest_0588 0.82 -2.0
639,234 - Psest_0588 0.82 -1.6
639,234 - Psest_0588 0.82 -0.4
639,234 - Psest_0588 0.82 +0.8
639,234 - Psest_0588 0.82 +0.1
639,353 + +0.6
639,354 - +0.5
639,354 - -1.0
639,354 - +1.1
639,354 - +0.6
639,465 - Psest_0589 0.28 +0.4
639,465 - Psest_0589 0.28 -0.3
639,504 + Psest_0589 0.36 -0.8
639,536 + Psest_0589 0.43 -0.0
639,537 - Psest_0589 0.44 +1.1
639,537 - Psest_0589 0.44 +2.0
639,537 - Psest_0589 0.44 -0.4
639,537 - Psest_0589 0.44 +1.1
639,557 - Psest_0589 0.48 -0.9
639,601 + Psest_0589 0.58 +0.7
639,601 + Psest_0589 0.58 +1.2
639,602 - Psest_0589 0.58 +0.5
639,602 - Psest_0589 0.58 -1.0
639,608 - Psest_0589 0.59 -0.4
639,609 + Psest_0589 0.59 -0.1
639,609 + Psest_0589 0.59 -0.9
639,609 + Psest_0589 0.59 +0.8
639,609 + Psest_0589 0.59 -0.3
639,609 + Psest_0589 0.59 +0.2
639,610 - Psest_0589 0.60 -0.6
639,610 - Psest_0589 0.60 +0.7
639,610 - Psest_0589 0.60 -0.5
639,638 + Psest_0589 0.66 +0.1
639,639 - Psest_0589 0.66 +1.1
639,716 - Psest_0589 0.83 +0.1
639,720 - Psest_0589 0.84 -0.1
639,735 + Psest_0589 0.87 -1.2
639,740 - Psest_0589 0.88 +0.2
639,780 + -0.4
639,798 - -0.0
639,798 - -0.6
639,798 - -0.2
639,856 + -0.3
639,857 - +0.6
639,857 - +0.7
639,881 + -0.4
639,931 - -1.4
639,940 + +0.8
639,957 - +0.6
639,957 - -0.3
639,967 + +1.6
640,011 + +1.0
640,025 + -0.4
640,025 + -1.2
640,026 - +0.0
640,030 + -0.8
640,031 - +0.6
640,033 - -0.8
640,128 - +0.6
640,145 - +0.8
640,145 - -0.0
640,156 + -0.2
640,157 - -1.0
640,157 - +1.0
640,157 - +0.6
640,191 + +0.6
640,191 + +0.6
640,191 + -1.0
640,192 - +0.1
640,192 - -0.4
640,192 - +0.8
640,192 - +0.6
640,192 - -1.4
640,225 + -1.0
640,225 + -0.0
640,228 + -0.1
640,228 + -1.2
640,228 + -0.0
640,239 + +1.1
640,240 - -0.2
640,240 - +0.6
640,240 - +0.2
640,240 - -0.8
640,240 - -0.8
640,240 - -0.7
640,240 - +0.0
640,240 - -1.8
640,240 - +0.2
640,240 - -0.0
640,421 + -0.5
640,421 + +1.0
640,421 + -0.5
640,422 - -0.4
640,422 - -0.8
640,422 - -0.4
640,422 - -0.8
640,422 - -0.3
640,495 + +1.3
640,495 + -0.1
640,495 + +0.3
640,543 + Psest_0590 0.12 -0.4
640,543 + Psest_0590 0.12 +0.6
640,543 + Psest_0590 0.12 -0.8
640,543 + Psest_0590 0.12 -2.6
640,544 - Psest_0590 0.12 -1.8
640,544 - Psest_0590 0.12 -0.0
640,544 - Psest_0590 0.12 -0.3
640,580 + Psest_0590 0.15 -0.8
640,581 - Psest_0590 0.15 -0.5
640,581 - Psest_0590 0.15 +1.0
640,581 - Psest_0590 0.15 +1.1
640,581 - Psest_0590 0.15 -0.5
640,581 - Psest_0590 0.15 -0.9
640,615 + Psest_0590 0.17 -0.4
640,615 + Psest_0590 0.17 -1.2
640,616 - Psest_0590 0.17 +0.6
640,616 - Psest_0590 0.17 -1.2
640,616 - Psest_0590 0.17 +1.6
640,616 - Psest_0590 0.17 -0.5
640,616 - Psest_0590 0.17 +1.6
640,616 - Psest_0590 0.17 +0.1
640,617 + Psest_0590 0.17 +0.6
640,638 + Psest_0590 0.18 -0.2
640,694 + Psest_0590 0.21 -0.4
640,694 + Psest_0590 0.21 +1.0
640,695 - Psest_0590 0.21 +0.8
640,695 - Psest_0590 0.21 -0.3
640,695 - Psest_0590 0.21 -0.4
640,695 - Psest_0590 0.21 -0.3
640,695 - Psest_0590 0.21 -0.1
640,695 - Psest_0590 0.21 -0.9
640,695 - Psest_0590 0.21 -1.1
640,727 + Psest_0590 0.23 +1.5
640,784 - Psest_0590 0.27 -0.3

Or see this region's nucleotide sequence