Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2544

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2542 and Psest_2543 overlap by 4 nucleotidesPsest_2543 and Psest_2544 are separated by 99 nucleotidesPsest_2544 and Psest_2545 are separated by 144 nucleotidesPsest_2545 and Psest_2546 are separated by 101 nucleotides Psest_2542: Psest_2542 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,721,805 to 2,722,578 _2542 Psest_2543: Psest_2543 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,722,575 to 2,723,321 _2543 Psest_2544: Psest_2544 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,723,421 to 2,724,410 _2544 Psest_2545: Psest_2545 - recombination protein RecR, at 2,724,555 to 2,725,154 _2545 Psest_2546: Psest_2546 - DNA-binding protein, YbaB/EbfC family, at 2,725,256 to 2,725,582 _2546 Position (kb) 2723 2724 2725Strain fitness (log2 ratio) -2 -1 0 1 2at 2722.541 kb on + strandat 2722.541 kb on + strandat 2722.542 kb on - strandat 2722.542 kb on - strandat 2722.738 kb on + strand, within Psest_2543at 2722.738 kb on + strand, within Psest_2543at 2722.945 kb on + strand, within Psest_2543at 2722.948 kb on + strand, within Psest_2543at 2722.948 kb on + strand, within Psest_2543at 2722.948 kb on + strand, within Psest_2543at 2722.980 kb on + strand, within Psest_2543at 2723.074 kb on + strand, within Psest_2543at 2723.298 kb on + strandat 2723.299 kb on - strandat 2723.299 kb on - strandat 2723.299 kb on - strandat 2723.299 kb on - strandat 2723.299 kb on - strandat 2723.299 kb on - strandat 2723.602 kb on - strand, within Psest_2544at 2723.662 kb on + strand, within Psest_2544at 2723.662 kb on + strand, within Psest_2544at 2723.662 kb on + strand, within Psest_2544at 2723.663 kb on - strand, within Psest_2544at 2723.812 kb on - strand, within Psest_2544at 2723.812 kb on - strand, within Psest_2544at 2723.827 kb on + strand, within Psest_2544at 2723.828 kb on - strand, within Psest_2544at 2723.828 kb on - strand, within Psest_2544at 2723.828 kb on - strand, within Psest_2544at 2724.124 kb on - strand, within Psest_2544at 2724.329 kb on - strandat 2724.329 kb on - strandat 2724.441 kb on - strandat 2724.490 kb on + strandat 2724.537 kb on + strandat 2724.558 kb on + strandat 2724.559 kb on - strandat 2724.559 kb on - strandat 2724.559 kb on - strandat 2724.559 kb on - strandat 2724.559 kb on - strandat 2724.694 kb on + strand, within Psest_2545at 2724.694 kb on + strand, within Psest_2545at 2724.695 kb on - strand, within Psest_2545at 2724.789 kb on - strand, within Psest_2545at 2724.848 kb on - strand, within Psest_2545at 2724.848 kb on - strand, within Psest_2545at 2725.096 kb on - strandat 2725.159 kb on - strandat 2725.250 kb on + strandat 2725.250 kb on + strandat 2725.257 kb on + strandat 2725.257 kb on + strandat 2725.258 kb on - strandat 2725.258 kb on - strandat 2725.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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2,722,541 + -0.1
2,722,541 + -1.3
2,722,542 - -0.4
2,722,542 - -0.8
2,722,738 + Psest_2543 0.22 -0.9
2,722,738 + Psest_2543 0.22 -0.3
2,722,945 + Psest_2543 0.50 -0.8
2,722,948 + Psest_2543 0.50 +0.2
2,722,948 + Psest_2543 0.50 -0.2
2,722,948 + Psest_2543 0.50 -1.3
2,722,980 + Psest_2543 0.54 +0.5
2,723,074 + Psest_2543 0.67 +0.5
2,723,298 + -0.5
2,723,299 - -0.4
2,723,299 - +0.1
2,723,299 - +2.0
2,723,299 - -0.9
2,723,299 - -1.5
2,723,299 - -0.5
2,723,602 - Psest_2544 0.18 -2.1
2,723,662 + Psest_2544 0.24 -0.5
2,723,662 + Psest_2544 0.24 -0.8
2,723,662 + Psest_2544 0.24 -0.5
2,723,663 - Psest_2544 0.24 -0.5
2,723,812 - Psest_2544 0.39 +0.5
2,723,812 - Psest_2544 0.39 -0.5
2,723,827 + Psest_2544 0.41 -0.7
2,723,828 - Psest_2544 0.41 +0.5
2,723,828 - Psest_2544 0.41 -0.3
2,723,828 - Psest_2544 0.41 -0.6
2,724,124 - Psest_2544 0.71 +0.5
2,724,329 - -1.2
2,724,329 - -1.4
2,724,441 - -1.0
2,724,490 + -0.1
2,724,537 + -2.3
2,724,558 + +1.6
2,724,559 - -0.9
2,724,559 - +1.5
2,724,559 - -0.9
2,724,559 - +0.7
2,724,559 - +1.5
2,724,694 + Psest_2545 0.23 -0.1
2,724,694 + Psest_2545 0.23 -0.1
2,724,695 - Psest_2545 0.23 -1.5
2,724,789 - Psest_2545 0.39 +0.0
2,724,848 - Psest_2545 0.49 +0.3
2,724,848 - Psest_2545 0.49 -0.8
2,725,096 - +0.5
2,725,159 - -0.6
2,725,250 + -0.9
2,725,250 + +0.3
2,725,257 + -0.5
2,725,257 + +2.3
2,725,258 - -0.1
2,725,258 - -1.9
2,725,258 - +0.7

Or see this region's nucleotide sequence