Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1089 and Psest_1090 overlap by 4 nucleotides Psest_1090 and Psest_1091 are separated by 86 nucleotides
Psest_1089: Psest_1089 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,180,301 to 1,181,077
_1089
Psest_1090: Psest_1090 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,181,074 to 1,181,790
_1090
Psest_1091: Psest_1091 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,181,877 to 1,183,094
_1091
Position (kb)
1181
1182 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1180.081 kb on + strand at 1180.128 kb on + strand at 1180.128 kb on + strand at 1180.128 kb on + strand at 1180.129 kb on - strand at 1180.138 kb on + strand at 1180.140 kb on + strand at 1180.240 kb on - strand at 1180.897 kb on + strand, within Psest_1089 at 1180.897 kb on + strand, within Psest_1089 at 1180.898 kb on - strand, within Psest_1089 at 1180.977 kb on + strand, within Psest_1089 at 1180.978 kb on - strand, within Psest_1089 at 1180.994 kb on + strand, within Psest_1089 at 1181.128 kb on + strand at 1181.437 kb on + strand, within Psest_1090 at 1181.437 kb on + strand, within Psest_1090 at 1181.437 kb on + strand, within Psest_1090 at 1181.438 kb on - strand, within Psest_1090 at 1181.459 kb on - strand, within Psest_1090 at 1181.612 kb on + strand, within Psest_1090 at 1181.612 kb on + strand, within Psest_1090 at 1181.613 kb on - strand, within Psest_1090 at 1181.613 kb on - strand, within Psest_1090 at 1181.613 kb on - strand, within Psest_1090 at 1181.613 kb on - strand, within Psest_1090 at 1181.698 kb on + strand, within Psest_1090 at 1181.698 kb on + strand, within Psest_1090 at 1181.698 kb on + strand, within Psest_1090 at 1181.699 kb on - strand, within Psest_1090 at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.874 kb on + strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.875 kb on - strand at 1181.988 kb on - strand at 1182.000 kb on + strand, within Psest_1091 at 1182.315 kb on + strand, within Psest_1091 at 1182.315 kb on + strand, within Psest_1091 at 1182.315 kb on + strand, within Psest_1091 at 1182.316 kb on - strand, within Psest_1091 at 1182.316 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.381 kb on + strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.400 kb on - strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.756 kb on + strand, within Psest_1091 at 1182.760 kb on - strand, within Psest_1091 at 1182.760 kb on - strand, within Psest_1091
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 1,180,081 + +1.5 1,180,128 + +0.0 1,180,128 + -0.0 1,180,128 + +1.5 1,180,129 - +0.7 1,180,138 + +0.2 1,180,140 + +0.8 1,180,240 - -0.0 1,180,897 + Psest_1089 0.77 +1.5 1,180,897 + Psest_1089 0.77 -0.0 1,180,898 - Psest_1089 0.77 -0.4 1,180,977 + Psest_1089 0.87 +1.5 1,180,978 - Psest_1089 0.87 -0.2 1,180,994 + Psest_1089 0.89 -0.7 1,181,128 + -0.3 1,181,437 + Psest_1090 0.51 -1.7 1,181,437 + Psest_1090 0.51 -0.8 1,181,437 + Psest_1090 0.51 -0.2 1,181,438 - Psest_1090 0.51 -1.5 1,181,459 - Psest_1090 0.54 -1.9 1,181,612 + Psest_1090 0.75 -1.0 1,181,612 + Psest_1090 0.75 -0.6 1,181,613 - Psest_1090 0.75 +0.2 1,181,613 - Psest_1090 0.75 -0.5 1,181,613 - Psest_1090 0.75 -0.8 1,181,613 - Psest_1090 0.75 -0.8 1,181,698 + Psest_1090 0.87 +0.1 1,181,698 + Psest_1090 0.87 +0.3 1,181,698 + Psest_1090 0.87 +0.2 1,181,699 - Psest_1090 0.87 -0.0 1,181,874 + -0.3 1,181,874 + +0.2 1,181,874 + +0.4 1,181,874 + -1.1 1,181,874 + +1.1 1,181,874 + -0.8 1,181,874 + -0.3 1,181,874 + +2.9 1,181,874 + +1.0 1,181,874 + +0.5 1,181,874 + -0.0 1,181,874 + -0.5 1,181,874 + -0.5 1,181,875 - +0.1 1,181,875 - -1.6 1,181,875 - -0.5 1,181,875 - +2.0 1,181,875 - +0.8 1,181,875 - +0.3 1,181,875 - +0.3 1,181,875 - +1.7 1,181,875 - +1.0 1,181,875 - +0.4 1,181,875 - -0.0 1,181,875 - +0.0 1,181,875 - -0.2 1,181,875 - -0.5 1,181,875 - +0.5 1,181,875 - -0.5 1,181,875 - -0.2 1,181,875 - -0.3 1,181,875 - +0.8 1,181,875 - -0.0 1,181,875 - +1.5 1,181,875 - -0.5 1,181,988 - +0.5 1,182,000 + Psest_1091 0.10 -0.5 1,182,315 + Psest_1091 0.36 +1.5 1,182,315 + Psest_1091 0.36 +0.0 1,182,315 + Psest_1091 0.36 -0.0 1,182,316 - Psest_1091 0.36 +0.1 1,182,316 - Psest_1091 0.36 -1.5 1,182,325 - Psest_1091 0.37 -0.7 1,182,325 - Psest_1091 0.37 -0.8 1,182,325 - Psest_1091 0.37 +1.2 1,182,325 - Psest_1091 0.37 -0.8 1,182,325 - Psest_1091 0.37 -0.5 1,182,381 + Psest_1091 0.41 +0.6 1,182,382 - Psest_1091 0.41 -0.1 1,182,382 - Psest_1091 0.41 -1.0 1,182,382 - Psest_1091 0.41 +0.1 1,182,382 - Psest_1091 0.41 -0.6 1,182,382 - Psest_1091 0.41 -0.9 1,182,382 - Psest_1091 0.41 -0.2 1,182,382 - Psest_1091 0.41 -1.0 1,182,382 - Psest_1091 0.41 +1.5 1,182,400 - Psest_1091 0.43 -0.2 1,182,510 + Psest_1091 0.52 -0.5 1,182,510 + Psest_1091 0.52 -0.0 1,182,510 + Psest_1091 0.52 +0.5 1,182,510 + Psest_1091 0.52 -0.8 1,182,510 + Psest_1091 0.52 -0.7 1,182,510 + Psest_1091 0.52 +0.5 1,182,510 + Psest_1091 0.52 -0.2 1,182,510 + Psest_1091 0.52 +0.5 1,182,510 + Psest_1091 0.52 +2.9 1,182,510 + Psest_1091 0.52 +0.1 1,182,510 + Psest_1091 0.52 -0.7 1,182,510 + Psest_1091 0.52 -0.3 1,182,511 - Psest_1091 0.52 -0.5 1,182,511 - Psest_1091 0.52 +0.3 1,182,511 - Psest_1091 0.52 -0.7 1,182,511 - Psest_1091 0.52 +0.4 1,182,511 - Psest_1091 0.52 -2.9 1,182,511 - Psest_1091 0.52 -0.5 1,182,511 - Psest_1091 0.52 -0.8 1,182,756 + Psest_1091 0.72 -0.3 1,182,760 - Psest_1091 0.72 +0.5 1,182,760 - Psest_1091 0.72 +0.2
Or see this region's nucleotide sequence