Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0821 and Psest_0822 are separated by 1 nucleotides Psest_0822 and Psest_0823 overlap by 4 nucleotides Psest_0823 and Psest_0824 overlap by 8 nucleotides Psest_0824 and Psest_0825 overlap by 26 nucleotides
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Psest_0822: Psest_0822 - Transcriptional regulators, at 895,441 to 895,899
_0822
Psest_0823: Psest_0823 - Transcriptional regulators, at 895,896 to 896,408
_0823
Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844
_0824
Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325
_0825
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1 at 895.002 kb on + strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.210 kb on + strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.353 kb on + strand at 895.354 kb on - strand at 895.447 kb on - strand at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.727 kb on - strand, within Psest_0822 at 895.744 kb on + strand, within Psest_0822 at 895.745 kb on - strand, within Psest_0822 at 896.155 kb on + strand, within Psest_0823 at 896.156 kb on - strand, within Psest_0823 at 896.196 kb on + strand, within Psest_0823 at 896.197 kb on - strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 897.159 kb on - strand, within Psest_0825
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 895,002 + Psest_0821 0.63 +0.0 895,002 + Psest_0821 0.63 -1.7 895,210 + Psest_0821 0.80 -2.0 895,211 - Psest_0821 0.81 -0.8 895,211 - Psest_0821 0.81 -0.5 895,353 + +1.4 895,354 - +0.9 895,447 - -0.9 895,726 + Psest_0822 0.62 +1.4 895,726 + Psest_0822 0.62 -2.3 895,726 + Psest_0822 0.62 -1.4 895,726 + Psest_0822 0.62 -1.3 895,726 + Psest_0822 0.62 -0.4 895,726 + Psest_0822 0.62 +0.4 895,727 - Psest_0822 0.62 -0.1 895,744 + Psest_0822 0.66 -0.7 895,745 - Psest_0822 0.66 -1.0 896,155 + Psest_0823 0.50 -1.7 896,156 - Psest_0823 0.51 -0.6 896,196 + Psest_0823 0.58 -1.3 896,197 - Psest_0823 0.59 -2.5 896,229 + Psest_0823 0.65 -1.4 896,229 + Psest_0823 0.65 -1.5 896,230 - Psest_0823 0.65 -0.4 896,230 - Psest_0823 0.65 +0.1 897,159 - Psest_0825 0.67 -0.4
Or see this region's nucleotide sequence