Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1655 and Psest_1656 are separated by 3 nucleotides Psest_1656 and Psest_1657 overlap by 8 nucleotides Psest_1657 and Psest_1658 are separated by 2 nucleotides
Psest_1655: Psest_1655 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 1,764,872 to 1,766,209
_1655
Psest_1656: Psest_1656 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 1,766,213 to 1,767,424
_1656
Psest_1657: Psest_1657 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 1,767,417 to 1,768,211
_1657
Psest_1658: Psest_1658 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 1,768,214 to 1,768,882
_1658
Position (kb) 1766
1767
1768 Strain fitness (log2 ratio) -1
0
1 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.921 kb on + strand, within Psest_1655 at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.270 kb on + strand at 1766.401 kb on + strand, within Psest_1656 at 1766.576 kb on + strand, within Psest_1656 at 1766.576 kb on + strand, within Psest_1656 at 1766.591 kb on + strand, within Psest_1656 at 1766.591 kb on + strand, within Psest_1656 at 1767.172 kb on + strand, within Psest_1656 at 1767.172 kb on + strand, within Psest_1656 at 1767.415 kb on + strand at 1767.415 kb on + strand at 1767.415 kb on + strand at 1767.422 kb on + strand at 1767.798 kb on + strand, within Psest_1657 at 1767.798 kb on + strand, within Psest_1657 at 1767.798 kb on + strand, within Psest_1657 at 1767.800 kb on + strand, within Psest_1657 at 1767.800 kb on + strand, within Psest_1657 at 1767.800 kb on + strand, within Psest_1657 at 1768.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 1,765,877 + Psest_1655 0.75 +0.6 1,765,877 + Psest_1655 0.75 +0.6 1,765,877 + Psest_1655 0.75 -1.0 1,765,877 + Psest_1655 0.75 -1.2 1,765,877 + Psest_1655 0.75 -0.7 1,765,919 + Psest_1655 0.78 -1.0 1,765,919 + Psest_1655 0.78 -0.4 1,765,919 + Psest_1655 0.78 +1.6 1,765,919 + Psest_1655 0.78 +0.0 1,765,919 + Psest_1655 0.78 +0.0 1,765,919 + Psest_1655 0.78 +0.0 1,765,919 + Psest_1655 0.78 +0.0 1,765,919 + Psest_1655 0.78 -0.4 1,765,919 + Psest_1655 0.78 -1.0 1,765,919 + Psest_1655 0.78 +0.6 1,765,919 + Psest_1655 0.78 +1.6 1,765,919 + Psest_1655 0.78 -0.4 1,765,920 - Psest_1655 0.78 +0.6 1,765,920 - Psest_1655 0.78 -0.7 1,765,920 - Psest_1655 0.78 -0.7 1,765,920 - Psest_1655 0.78 +0.0 1,765,921 + Psest_1655 0.78 +0.0 1,766,135 + +0.0 1,766,135 + +0.0 1,766,135 + +0.0 1,766,135 + +0.0 1,766,270 + +0.6 1,766,401 + Psest_1656 0.16 +0.6 1,766,576 + Psest_1656 0.30 -0.4 1,766,576 + Psest_1656 0.30 +0.6 1,766,591 + Psest_1656 0.31 -1.0 1,766,591 + Psest_1656 0.31 -0.4 1,767,172 + Psest_1656 0.79 +0.6 1,767,172 + Psest_1656 0.79 -1.0 1,767,415 + -0.7 1,767,415 + -0.4 1,767,415 + -0.4 1,767,422 + +0.6 1,767,798 + Psest_1657 0.48 +0.0 1,767,798 + Psest_1657 0.48 +1.0 1,767,798 + Psest_1657 0.48 +0.6 1,767,800 + Psest_1657 0.48 +1.6 1,767,800 + Psest_1657 0.48 +0.6 1,767,800 + Psest_1657 0.48 -0.4 1,768,187 + +0.0
Or see this region's nucleotide sequence