Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0636 and Psest_0637 are separated by 83 nucleotides Psest_0637 and Psest_0638 are separated by 10 nucleotides Psest_0638 and Psest_0639 are separated by 76 nucleotides Psest_0639 and Psest_0640 are separated by 116 nucleotides
Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455
_0636
Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369
_0637
Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808
_0638
Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565
_0639
Psest_0640: Psest_0640 - Uncharacterized conserved protein, at 694,682 to 695,158
_0640
Position (kb) 693
694 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 692.483 kb on + strand at 692.485 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.552 kb on + strand at 692.552 kb on + strand at 692.552 kb on + strand at 692.553 kb on - strand at 692.553 kb on - strand at 692.553 kb on - strand at 692.567 kb on + strand at 692.568 kb on - strand at 692.909 kb on - strand at 692.995 kb on + strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 693.022 kb on + strand, within Psest_0637 at 693.092 kb on + strand, within Psest_0637 at 693.092 kb on + strand, within Psest_0637 at 693.093 kb on - strand, within Psest_0637 at 693.119 kb on - strand, within Psest_0637 at 693.121 kb on - strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.391 kb on + strand at 693.418 kb on + strand at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.477 kb on + strand, within Psest_0638 at 693.477 kb on + strand, within Psest_0638 at 693.478 kb on - strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.841 kb on + strand at 693.841 kb on + strand at 694.095 kb on + strand, within Psest_0639 at 694.096 kb on - strand, within Psest_0639 at 694.177 kb on + strand, within Psest_0639 at 694.178 kb on - strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.310 kb on - strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.525 kb on + strand at 694.525 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.722 kb on - strand at 694.722 kb on - strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 692,483 + -0.4 692,485 + +0.7 692,493 + -1.8 692,493 + -1.4 692,493 + +2.5 692,493 + +1.5 692,493 + -0.0 692,493 + -0.1 692,493 + -0.2 692,493 + -1.0 692,493 + -0.1 692,493 + -0.7 692,493 + +0.0 692,493 + +0.6 692,493 + -0.0 692,493 + -2.3 692,493 + -0.0 692,493 + -0.6 692,493 + +0.1 692,493 + +2.1 692,493 + +0.5 692,493 + -0.3 692,493 + -0.3 692,494 - +0.5 692,494 - +0.2 692,494 - -0.1 692,494 - +0.5 692,494 - -0.0 692,494 - -0.4 692,552 + +0.5 692,552 + +0.5 692,552 + -0.4 692,553 - +0.3 692,553 - -0.5 692,553 - -0.5 692,567 + +1.1 692,568 - +0.0 692,909 - +0.9 692,995 + Psest_0637 0.55 +0.5 692,996 - Psest_0637 0.55 -0.5 692,996 - Psest_0637 0.55 +0.5 692,996 - Psest_0637 0.55 -1.3 692,996 - Psest_0637 0.55 +0.0 693,022 + Psest_0637 0.58 -1.8 693,092 + Psest_0637 0.67 -0.6 693,092 + Psest_0637 0.67 -1.3 693,093 - Psest_0637 0.67 +3.1 693,119 - Psest_0637 0.70 +0.2 693,121 - Psest_0637 0.70 +0.5 693,232 + Psest_0637 0.83 -0.5 693,232 + Psest_0637 0.83 -0.1 693,232 + Psest_0637 0.83 -1.0 693,233 - Psest_0637 0.84 +2.8 693,233 - Psest_0637 0.84 -0.5 693,233 - Psest_0637 0.84 -0.3 693,233 - Psest_0637 0.84 -0.2 693,233 - Psest_0637 0.84 +0.3 693,233 - Psest_0637 0.84 +0.9 693,233 - Psest_0637 0.84 -0.3 693,391 + +0.9 693,418 + -0.8 693,474 + Psest_0638 0.22 -0.5 693,474 + Psest_0638 0.22 -0.4 693,474 + Psest_0638 0.22 -1.1 693,474 + Psest_0638 0.22 -2.3 693,474 + Psest_0638 0.22 -1.2 693,474 + Psest_0638 0.22 +0.2 693,475 - Psest_0638 0.22 +0.6 693,475 - Psest_0638 0.22 -1.2 693,475 - Psest_0638 0.22 -0.9 693,475 - Psest_0638 0.22 -0.1 693,477 + Psest_0638 0.23 +0.2 693,477 + Psest_0638 0.23 +0.7 693,478 - Psest_0638 0.23 +0.2 693,732 + Psest_0638 0.82 -0.6 693,732 + Psest_0638 0.82 -1.6 693,732 + Psest_0638 0.82 +0.9 693,732 + Psest_0638 0.82 -0.9 693,733 - Psest_0638 0.82 +1.6 693,733 - Psest_0638 0.82 +0.1 693,733 - Psest_0638 0.82 -0.4 693,733 - Psest_0638 0.82 +0.0 693,733 - Psest_0638 0.82 +3.1 693,841 + -0.4 693,841 + -0.1 694,095 + Psest_0639 0.31 -0.1 694,096 - Psest_0639 0.31 +0.5 694,177 + Psest_0639 0.43 -0.2 694,178 - Psest_0639 0.43 +0.1 694,309 + Psest_0639 0.62 +0.3 694,309 + Psest_0639 0.62 -0.6 694,310 - Psest_0639 0.62 +1.5 694,378 + Psest_0639 0.72 -0.1 694,378 + Psest_0639 0.72 -1.0 694,378 + Psest_0639 0.72 -0.1 694,379 - Psest_0639 0.73 -0.9 694,379 - Psest_0639 0.73 -1.0 694,379 - Psest_0639 0.73 -0.5 694,379 - Psest_0639 0.73 +0.1 694,379 - Psest_0639 0.73 -1.1 694,401 + Psest_0639 0.76 +1.3 694,401 + Psest_0639 0.76 -0.3 694,401 + Psest_0639 0.76 +0.4 694,525 + +0.2 694,525 + -0.4 694,721 + +0.2 694,721 + -1.3 694,721 + +0.4 694,721 + -1.1 694,721 + -1.5 694,722 - -1.0 694,722 - -0.9 694,724 + -0.8 694,724 + +0.5 694,724 + -0.3 694,724 + +1.5 694,725 - +0.2 694,725 - -0.7 694,725 - +0.2 694,760 + Psest_0640 0.16 -0.0 694,760 + Psest_0640 0.16 +0.4 694,760 + Psest_0640 0.16 -1.8
Or see this region's nucleotide sequence