Experiment: Nitrate/ lactate media with Nitrate 250mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0657 and Psest_0658 overlap by 11 nucleotides Psest_0658 and Psest_0659 are separated by 1 nucleotides Psest_0659 and Psest_0660 are separated by 22 nucleotides Psest_0660 and Psest_0661 are separated by 261 nucleotides
Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369
_0657
Psest_0658: Psest_0658 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 716,359 to 716,700
_0658
Psest_0659: Psest_0659 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 716,702 to 717,067
_0659
Psest_0660: Psest_0660 - Methyl-accepting chemotaxis protein, at 717,090 to 718,175
_0660
Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476
_0661
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.287 kb on + strand at 716.287 kb on + strand at 716.288 kb on - strand at 716.288 kb on - strand at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.630 kb on + strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 716.631 kb on - strand, within Psest_0658 at 717.171 kb on + strand at 717.171 kb on + strand at 717.171 kb on + strand at 717.427 kb on + strand, within Psest_0660 at 717.630 kb on - strand, within Psest_0660 at 717.630 kb on - strand, within Psest_0660 at 717.756 kb on - strand, within Psest_0660 at 718.250 kb on - strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.360 kb on - strand at 718.360 kb on - strand at 718.474 kb on - strand at 718.525 kb on - strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.863 kb on + strand, within Psest_0661 at 718.864 kb on - strand, within Psest_0661 at 719.108 kb on - strand, within Psest_0661
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM remove 716,287 + +0.3 716,287 + +0.5 716,288 - +0.5 716,288 - +0.1 716,630 + Psest_0658 0.79 +0.3 716,630 + Psest_0658 0.79 +1.1 716,630 + Psest_0658 0.79 -0.9 716,630 + Psest_0658 0.79 -0.3 716,630 + Psest_0658 0.79 +0.1 716,630 + Psest_0658 0.79 +1.1 716,630 + Psest_0658 0.79 +0.8 716,630 + Psest_0658 0.79 -1.4 716,630 + Psest_0658 0.79 -0.4 716,630 + Psest_0658 0.79 -0.1 716,630 + Psest_0658 0.79 +0.5 716,630 + Psest_0658 0.79 -1.3 716,630 + Psest_0658 0.79 +0.7 716,630 + Psest_0658 0.79 -0.3 716,631 - Psest_0658 0.80 -1.6 716,631 - Psest_0658 0.80 +0.3 716,631 - Psest_0658 0.80 +0.4 716,631 - Psest_0658 0.80 -0.3 716,631 - Psest_0658 0.80 +0.5 716,631 - Psest_0658 0.80 -1.1 716,631 - Psest_0658 0.80 -0.3 716,631 - Psest_0658 0.80 -0.6 716,631 - Psest_0658 0.80 -0.3 716,631 - Psest_0658 0.80 +2.1 716,631 - Psest_0658 0.80 +1.1 716,631 - Psest_0658 0.80 +0.3 717,171 + +0.9 717,171 + -1.2 717,171 + +1.1 717,427 + Psest_0660 0.31 -1.9 717,630 - Psest_0660 0.50 -1.5 717,630 - Psest_0660 0.50 -1.7 717,756 - Psest_0660 0.61 -0.9 718,250 - +0.8 718,359 + -0.8 718,359 + -0.1 718,359 + -0.4 718,360 - +0.3 718,360 - -1.3 718,474 - -0.7 718,525 - -0.3 718,599 + -0.7 718,599 + -0.1 718,599 + +0.4 718,599 + -0.3 718,600 - -1.0 718,600 - +0.6 718,600 - -1.1 718,600 - +0.6 718,601 + -1.0 718,601 + -0.0 718,601 + +1.4 718,601 + -0.3 718,601 + +0.7 718,601 + -0.3 718,601 + -0.4 718,601 + -0.6 718,601 + -0.1 718,601 + +0.7 718,601 + +0.1 718,601 + -0.4 718,601 + +0.3 718,602 - -1.4 718,602 - -1.8 718,602 - -1.7 718,602 - -0.3 718,602 - +1.1 718,602 - +2.1 718,602 - -1.2 718,602 - +0.5 718,602 - -0.5 718,602 - +0.5 718,602 - -1.0 718,863 + Psest_0661 0.21 +2.1 718,864 - Psest_0661 0.21 +0.5 719,108 - Psest_0661 0.33 -0.1
Or see this region's nucleotide sequence