Experiment: Nitrate/ lactate media with Nitrate 250mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0353 and Psest_0354 are separated by 199 nucleotides Psest_0354 and Psest_0355 are separated by 219 nucleotides Psest_0355 and Psest_0356 are separated by 15 nucleotides
Psest_0353: Psest_0353 - Methyl-accepting chemotaxis protein, at 377,220 to 378,842
_0353
Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9) <small>(from data)</small>, at 379,042 to 381,222
_0354
Psest_0355: Psest_0355 - Glycine cleavage system regulatory protein, at 381,442 to 381,966
_0355
Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872
_0356
Position (kb) 379
380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.340 kb on + strand, within Psest_0353 at 378.341 kb on - strand, within Psest_0353 at 378.341 kb on - strand, within Psest_0353 at 378.482 kb on - strand, within Psest_0353 at 378.758 kb on + strand at 378.758 kb on + strand at 378.759 kb on - strand at 378.759 kb on - strand at 378.769 kb on + strand at 378.769 kb on + strand at 378.770 kb on - strand at 378.793 kb on - strand at 378.954 kb on + strand at 378.955 kb on - strand at 378.955 kb on - strand at 378.996 kb on - strand at 379.011 kb on + strand at 379.044 kb on - strand at 379.311 kb on + strand, within Psest_0354 at 379.311 kb on + strand, within Psest_0354 at 379.312 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.404 kb on - strand, within Psest_0354 at 379.914 kb on + strand, within Psest_0354 at 379.915 kb on - strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.045 kb on + strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.046 kb on - strand, within Psest_0354 at 380.261 kb on + strand, within Psest_0354 at 380.261 kb on + strand, within Psest_0354 at 380.262 kb on - strand, within Psest_0354 at 380.262 kb on - strand, within Psest_0354 at 380.807 kb on + strand, within Psest_0354 at 380.807 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.981 kb on + strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 381.173 kb on + strand at 381.245 kb on + strand at 381.245 kb on + strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.272 kb on + strand at 381.289 kb on + strand at 381.289 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.386 kb on + strand at 381.386 kb on + strand at 381.387 kb on - strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.389 kb on - strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.393 kb on - strand at 381.528 kb on + strand, within Psest_0355 at 381.629 kb on + strand, within Psest_0355 at 381.713 kb on + strand, within Psest_0355 at 381.996 kb on + strand at 381.996 kb on + strand at 381.996 kb on + strand at 381.997 kb on - strand at 381.997 kb on - strand at 382.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM remove 378,340 + Psest_0353 0.69 -0.6 378,341 - Psest_0353 0.69 +0.1 378,341 - Psest_0353 0.69 -1.4 378,482 - Psest_0353 0.78 -0.1 378,758 + -0.5 378,758 + -1.2 378,759 - +0.2 378,759 - +0.5 378,769 + +0.4 378,769 + +0.3 378,770 - -0.7 378,793 - +2.1 378,954 + +0.0 378,955 - +0.5 378,955 - +0.3 378,996 - -0.0 379,011 + +0.7 379,044 - -0.0 379,311 + Psest_0354 0.12 -1.4 379,311 + Psest_0354 0.12 +1.3 379,312 - Psest_0354 0.12 -0.5 379,404 - Psest_0354 0.17 -0.2 379,404 - Psest_0354 0.17 -1.7 379,404 - Psest_0354 0.17 -0.1 379,404 - Psest_0354 0.17 -0.6 379,914 + Psest_0354 0.40 -0.3 379,915 - Psest_0354 0.40 +0.1 380,045 + Psest_0354 0.46 +0.1 380,045 + Psest_0354 0.46 +0.5 380,045 + Psest_0354 0.46 +0.5 380,045 + Psest_0354 0.46 -2.3 380,045 + Psest_0354 0.46 -1.1 380,045 + Psest_0354 0.46 +1.1 380,045 + Psest_0354 0.46 +0.3 380,045 + Psest_0354 0.46 -0.2 380,045 + Psest_0354 0.46 -0.2 380,045 + Psest_0354 0.46 -0.2 380,045 + Psest_0354 0.46 -0.7 380,046 - Psest_0354 0.46 +2.1 380,046 - Psest_0354 0.46 +0.6 380,046 - Psest_0354 0.46 -0.1 380,046 - Psest_0354 0.46 -0.5 380,046 - Psest_0354 0.46 +0.8 380,046 - Psest_0354 0.46 +0.7 380,046 - Psest_0354 0.46 -0.9 380,261 + Psest_0354 0.56 +0.5 380,261 + Psest_0354 0.56 -0.2 380,262 - Psest_0354 0.56 +0.5 380,262 - Psest_0354 0.56 -0.7 380,807 + Psest_0354 0.81 -1.1 380,807 + Psest_0354 0.81 -0.9 380,981 + Psest_0354 0.89 -0.0 380,981 + Psest_0354 0.89 +0.8 380,981 + Psest_0354 0.89 -1.2 380,981 + Psest_0354 0.89 +0.6 380,981 + Psest_0354 0.89 +1.3 380,981 + Psest_0354 0.89 -0.9 380,981 + Psest_0354 0.89 +0.3 380,981 + Psest_0354 0.89 +0.6 380,981 + Psest_0354 0.89 +0.1 380,981 + Psest_0354 0.89 +1.3 380,981 + Psest_0354 0.89 -1.1 380,981 + Psest_0354 0.89 +0.6 380,982 - Psest_0354 0.89 -0.7 380,982 - Psest_0354 0.89 +0.3 380,982 - Psest_0354 0.89 -1.2 380,982 - Psest_0354 0.89 +2.1 380,982 - Psest_0354 0.89 -1.0 381,173 + +2.1 381,245 + +0.3 381,245 + -0.1 381,246 - -0.2 381,246 - -0.2 381,246 - +0.8 381,272 + +1.4 381,289 + +0.2 381,289 + -1.1 381,292 + -0.7 381,292 + +0.8 381,292 + -0.8 381,292 + -0.1 381,292 + +0.6 381,292 + +0.5 381,292 + +0.9 381,293 - -1.1 381,293 - +0.1 381,293 - +0.5 381,293 - -0.0 381,293 - +0.6 381,293 - -0.4 381,293 - +0.4 381,293 - -2.0 381,293 - +0.3 381,293 - -1.2 381,293 - +1.5 381,293 - +1.3 381,293 - +0.1 381,293 - +0.2 381,293 - -1.4 381,293 - -1.1 381,386 + -1.4 381,386 + +0.3 381,387 - -1.7 381,388 + +0.2 381,388 + +1.3 381,388 + +1.8 381,388 + +0.1 381,388 + -0.4 381,388 + +0.1 381,388 + -0.5 381,388 + +2.1 381,388 + +1.1 381,388 + +0.9 381,388 + -0.7 381,389 - -0.0 381,392 + +0.5 381,392 + +0.6 381,392 + -0.4 381,392 + -0.7 381,392 + -0.7 381,393 - -0.7 381,528 + Psest_0355 0.16 +0.9 381,629 + Psest_0355 0.36 +1.7 381,713 + Psest_0355 0.52 -0.2 381,996 + -1.4 381,996 + +1.4 381,996 + -0.1 381,997 - -0.6 381,997 - -0.2 382,025 + +2.1
Or see this region's nucleotide sequence