Experiment: Nitrate/ lactate media with Nitrate 250mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0761 and Psest_0762 overlap by 1 nucleotides Psest_0762 and Psest_0763 overlap by 4 nucleotides Psest_0763 and Psest_0764 are separated by 241 nucleotides
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Psest_0762: Psest_0762 - Glucose/sorbosone dehydrogenases, at 831,318 to 832,616
_0762
Psest_0763: Psest_0763 - Predicted membrane protein, at 832,613 to 833,062
_0763
Psest_0764: Psest_0764 - diguanylate cyclase (GGDEF) domain, at 833,304 to 834,860
_0764
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.522 kb on - strand, within Psest_0761 at 830.562 kb on - strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.753 kb on + strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.774 kb on + strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 831.034 kb on + strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.198 kb on + strand, within Psest_0761 at 831.508 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.744 kb on - strand, within Psest_0762 at 831.878 kb on - strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.982 kb on + strand, within Psest_0762 at 832.001 kb on + strand, within Psest_0762 at 832.002 kb on - strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.130 kb on - strand, within Psest_0762 at 832.160 kb on - strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.438 kb on - strand, within Psest_0762 at 832.526 kb on - strand at 832.526 kb on - strand at 832.673 kb on + strand, within Psest_0763 at 832.750 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.929 kb on + strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 833.023 kb on + strand at 833.024 kb on - strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.068 kb on + strand at 833.068 kb on + strand at 833.144 kb on + strand at 833.145 kb on - strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM remove 830,347 - Psest_0761 0.14 +0.4 830,353 + Psest_0761 0.14 -0.5 830,387 + Psest_0761 0.17 -0.2 830,387 + Psest_0761 0.17 +0.8 830,388 - Psest_0761 0.17 -1.5 830,388 - Psest_0761 0.17 -1.1 830,388 - Psest_0761 0.17 -1.8 830,388 - Psest_0761 0.17 -0.9 830,388 - Psest_0761 0.17 -0.5 830,388 - Psest_0761 0.17 -0.9 830,497 + Psest_0761 0.27 -0.0 830,497 + Psest_0761 0.27 +0.8 830,498 - Psest_0761 0.27 +1.0 830,498 - Psest_0761 0.27 +1.2 830,498 - Psest_0761 0.27 -0.0 830,498 - Psest_0761 0.27 -0.5 830,498 - Psest_0761 0.27 +0.6 830,522 - Psest_0761 0.29 +0.4 830,562 - Psest_0761 0.33 -0.4 830,577 + Psest_0761 0.34 +1.0 830,577 + Psest_0761 0.34 -0.5 830,577 + Psest_0761 0.34 -0.7 830,577 + Psest_0761 0.34 +0.3 830,654 + Psest_0761 0.41 +2.1 830,654 + Psest_0761 0.41 -1.2 830,654 + Psest_0761 0.41 -0.2 830,654 + Psest_0761 0.41 -0.4 830,654 + Psest_0761 0.41 -0.3 830,654 + Psest_0761 0.41 +0.1 830,654 + Psest_0761 0.41 -0.4 830,654 + Psest_0761 0.41 -0.2 830,654 + Psest_0761 0.41 +0.2 830,654 + Psest_0761 0.41 -0.3 830,655 - Psest_0761 0.41 -0.0 830,655 - Psest_0761 0.41 +0.8 830,655 - Psest_0761 0.41 -1.0 830,655 - Psest_0761 0.41 +0.2 830,655 - Psest_0761 0.41 +2.8 830,655 - Psest_0761 0.41 -0.0 830,655 - Psest_0761 0.41 +0.6 830,655 - Psest_0761 0.41 +0.8 830,655 - Psest_0761 0.41 -0.2 830,655 - Psest_0761 0.41 -0.8 830,753 + Psest_0761 0.50 +0.2 830,754 - Psest_0761 0.50 -0.8 830,754 - Psest_0761 0.50 -1.2 830,774 + Psest_0761 0.52 -0.8 830,775 - Psest_0761 0.52 +0.7 830,775 - Psest_0761 0.52 +0.2 830,775 - Psest_0761 0.52 -0.1 830,775 - Psest_0761 0.52 +2.8 830,775 - Psest_0761 0.52 -1.2 830,775 - Psest_0761 0.52 -0.5 830,825 + Psest_0761 0.56 -0.4 830,825 + Psest_0761 0.56 +1.8 831,034 + Psest_0761 0.75 -0.3 831,035 - Psest_0761 0.75 -0.5 831,035 - Psest_0761 0.75 +0.8 831,055 + Psest_0761 0.77 -0.8 831,055 + Psest_0761 0.77 +1.0 831,055 + Psest_0761 0.77 -0.5 831,115 + Psest_0761 0.82 -0.2 831,115 + Psest_0761 0.82 -0.5 831,115 + Psest_0761 0.82 +0.8 831,115 + Psest_0761 0.82 +0.2 831,115 + Psest_0761 0.82 -0.2 831,115 + Psest_0761 0.82 +0.8 831,115 + Psest_0761 0.82 -2.1 831,115 + Psest_0761 0.82 -0.1 831,115 + Psest_0761 0.82 +1.4 831,115 + Psest_0761 0.82 +1.8 831,115 + Psest_0761 0.82 +1.8 831,115 + Psest_0761 0.82 +0.9 831,115 + Psest_0761 0.82 -2.2 831,116 - Psest_0761 0.82 -1.2 831,116 - Psest_0761 0.82 -0.7 831,116 - Psest_0761 0.82 +1.8 831,116 - Psest_0761 0.82 +0.6 831,116 - Psest_0761 0.82 -1.0 831,116 - Psest_0761 0.82 +2.2 831,116 - Psest_0761 0.82 +0.2 831,116 - Psest_0761 0.82 +0.8 831,116 - Psest_0761 0.82 +0.4 831,116 - Psest_0761 0.82 -0.9 831,116 - Psest_0761 0.82 +2.1 831,116 - Psest_0761 0.82 +1.0 831,116 - Psest_0761 0.82 -0.0 831,116 - Psest_0761 0.82 +0.3 831,118 + Psest_0761 0.82 +0.8 831,118 + Psest_0761 0.82 -1.4 831,118 + Psest_0761 0.82 +1.5 831,118 + Psest_0761 0.82 +0.2 831,118 + Psest_0761 0.82 +0.2 831,118 + Psest_0761 0.82 +0.8 831,118 + Psest_0761 0.82 -1.3 831,118 + Psest_0761 0.82 -0.2 831,118 + Psest_0761 0.82 +0.5 831,118 + Psest_0761 0.82 +0.5 831,119 - Psest_0761 0.82 -1.5 831,119 - Psest_0761 0.82 +0.2 831,119 - Psest_0761 0.82 -1.7 831,119 - Psest_0761 0.82 +0.2 831,119 - Psest_0761 0.82 -0.1 831,119 - Psest_0761 0.82 -0.8 831,119 - Psest_0761 0.82 -0.9 831,119 - Psest_0761 0.82 -0.1 831,198 + Psest_0761 0.89 +0.4 831,508 + Psest_0762 0.15 -0.6 831,727 + Psest_0762 0.31 +0.8 831,727 + Psest_0762 0.31 +0.4 831,728 - Psest_0762 0.32 -0.5 831,728 - Psest_0762 0.32 +2.8 831,728 - Psest_0762 0.32 +0.4 831,744 - Psest_0762 0.33 -0.1 831,878 - Psest_0762 0.43 -0.1 831,976 + Psest_0762 0.51 -0.5 831,976 + Psest_0762 0.51 +1.0 831,976 + Psest_0762 0.51 +1.4 831,976 + Psest_0762 0.51 +1.8 831,976 + Psest_0762 0.51 -0.3 831,977 - Psest_0762 0.51 +0.7 831,977 - Psest_0762 0.51 -0.8 831,977 - Psest_0762 0.51 +0.2 831,977 - Psest_0762 0.51 -1.0 831,977 - Psest_0762 0.51 -1.0 831,982 + Psest_0762 0.51 -1.0 832,001 + Psest_0762 0.53 -1.0 832,002 - Psest_0762 0.53 +0.5 832,129 + Psest_0762 0.62 +1.8 832,129 + Psest_0762 0.62 +1.8 832,129 + Psest_0762 0.62 +0.7 832,129 + Psest_0762 0.62 +1.0 832,129 + Psest_0762 0.62 +0.4 832,129 + Psest_0762 0.62 -0.5 832,129 + Psest_0762 0.62 -0.8 832,130 - Psest_0762 0.63 -0.2 832,160 - Psest_0762 0.65 -0.2 832,201 + Psest_0762 0.68 -0.2 832,201 + Psest_0762 0.68 +0.0 832,202 - Psest_0762 0.68 -1.0 832,202 - Psest_0762 0.68 +1.3 832,438 - Psest_0762 0.86 +0.8 832,526 - -0.4 832,526 - +1.0 832,673 + Psest_0763 0.13 +0.3 832,750 + Psest_0763 0.30 -0.2 832,788 + Psest_0763 0.39 +0.1 832,788 + Psest_0763 0.39 +1.8 832,788 + Psest_0763 0.39 +0.1 832,789 - Psest_0763 0.39 -0.3 832,789 - Psest_0763 0.39 +0.7 832,789 - Psest_0763 0.39 -1.6 832,917 + Psest_0763 0.68 -0.5 832,917 + Psest_0763 0.68 -0.2 832,918 - Psest_0763 0.68 +0.1 832,918 - Psest_0763 0.68 +0.8 832,929 + Psest_0763 0.70 -0.6 832,930 - Psest_0763 0.70 -1.2 832,930 - Psest_0763 0.70 +1.2 833,023 + -0.5 833,024 - -0.2 833,064 + -0.1 833,064 + -0.7 833,064 + -1.0 833,064 + +0.3 833,064 + +0.8 833,064 + +1.0 833,064 + +1.2 833,064 + +1.6 833,064 + +0.8 833,064 + +1.2 833,064 + -0.5 833,064 + -0.0 833,064 + +0.5 833,064 + -1.0 833,064 + -0.4 833,064 + +0.2 833,064 + -1.7 833,064 + +0.2 833,065 - -0.6 833,065 - +1.8 833,065 - -0.6 833,065 - -0.2 833,065 - -2.7 833,065 - +0.5 833,068 + +0.5 833,068 + -1.0 833,144 + -0.3 833,145 - +0.2 833,359 + -1.5 833,359 + -0.0 833,359 + -0.5 833,359 + +0.2 833,359 + +0.8 833,359 + +0.2 833,359 + -0.2 833,359 + -0.2 833,359 + +0.2 833,359 + +0.5 833,359 + +0.3 833,359 + -0.2 833,359 + -0.9 833,359 + -0.1 833,359 + -0.8 833,360 - -0.1 833,360 - +0.8 833,360 - -0.9 833,360 - +1.2 833,360 - +0.8 833,360 - +0.2 833,360 - -0.4 833,360 - -0.7 833,360 - -0.2 833,360 - -0.8 833,587 + Psest_0764 0.18 -1.3 833,587 + Psest_0764 0.18 -1.5 833,587 + Psest_0764 0.18 +0.5 833,587 + Psest_0764 0.18 -0.8 833,588 - Psest_0764 0.18 -0.4 833,588 - Psest_0764 0.18 +0.8 833,588 - Psest_0764 0.18 -0.4 833,588 - Psest_0764 0.18 +0.8 833,588 - Psest_0764 0.18 -0.8 833,588 - Psest_0764 0.18 -0.2 833,588 - Psest_0764 0.18 +1.8 833,588 - Psest_0764 0.18 -0.9 833,588 - Psest_0764 0.18 -0.9 833,588 - Psest_0764 0.18 -1.4 833,588 - Psest_0764 0.18 +0.3 833,588 - Psest_0764 0.18 -0.2 833,588 - Psest_0764 0.18 +0.5 833,588 - Psest_0764 0.18 -0.8 833,588 - Psest_0764 0.18 +0.4 833,588 - Psest_0764 0.18 +0.5
Or see this region's nucleotide sequence