Experiment: Nitrate/ lactate media with Nitrate 250mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0759 and Psest_0760 are separated by 294 nucleotides Psest_0760 and Psest_0761 are separated by 25 nucleotides Psest_0761 and Psest_0762 overlap by 1 nucleotides
Psest_0759: Psest_0759 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)., at 828,732 to 829,478
_0759
Psest_0760: Psest_0760 - Polyketide cyclase / dehydrase and lipid transport., at 829,773 to 830,168
_0760
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Psest_0762: Psest_0762 - Glucose/sorbosone dehydrogenases, at 831,318 to 832,616
_0762
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 829.400 kb on + strand, within Psest_0759 at 829.600 kb on + strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.791 kb on - strand at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.856 kb on - strand, within Psest_0760 at 830.088 kb on - strand, within Psest_0760 at 830.272 kb on + strand at 830.272 kb on + strand at 830.272 kb on + strand at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.522 kb on - strand, within Psest_0761 at 830.562 kb on - strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.753 kb on + strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.774 kb on + strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 831.034 kb on + strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.198 kb on + strand, within Psest_0761 at 831.508 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.744 kb on - strand, within Psest_0762 at 831.878 kb on - strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.982 kb on + strand, within Psest_0762 at 832.001 kb on + strand, within Psest_0762 at 832.002 kb on - strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.130 kb on - strand, within Psest_0762 at 832.160 kb on - strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM remove 829,400 + Psest_0759 0.89 +0.8 829,600 + -0.4 829,601 - -0.5 829,601 - +1.8 829,601 - -0.5 829,725 + -1.0 829,725 + -1.2 829,725 + -0.8 829,725 + +0.1 829,725 + -1.4 829,725 + +1.4 829,725 + -2.0 829,725 + +1.8 829,725 + -0.8 829,725 + +0.4 829,725 + -0.4 829,726 - +0.1 829,726 - +0.6 829,726 - -0.2 829,726 - -1.0 829,726 - -1.0 829,791 - -1.0 829,827 + Psest_0760 0.14 -1.0 829,827 + Psest_0760 0.14 -0.2 829,827 + Psest_0760 0.14 -0.3 829,827 + Psest_0760 0.14 -1.7 829,828 - Psest_0760 0.14 -0.5 829,828 - Psest_0760 0.14 -0.2 829,828 - Psest_0760 0.14 -0.5 829,828 - Psest_0760 0.14 -1.5 829,828 - Psest_0760 0.14 -0.5 829,856 - Psest_0760 0.21 -0.8 830,088 - Psest_0760 0.80 -0.2 830,272 + +0.5 830,272 + -0.3 830,272 + -0.5 830,347 - Psest_0761 0.14 +0.4 830,353 + Psest_0761 0.14 -0.5 830,387 + Psest_0761 0.17 -0.2 830,387 + Psest_0761 0.17 +0.8 830,388 - Psest_0761 0.17 -1.5 830,388 - Psest_0761 0.17 -1.1 830,388 - Psest_0761 0.17 -1.8 830,388 - Psest_0761 0.17 -0.9 830,388 - Psest_0761 0.17 -0.5 830,388 - Psest_0761 0.17 -0.9 830,497 + Psest_0761 0.27 -0.0 830,497 + Psest_0761 0.27 +0.8 830,498 - Psest_0761 0.27 +1.0 830,498 - Psest_0761 0.27 +1.2 830,498 - Psest_0761 0.27 -0.0 830,498 - Psest_0761 0.27 -0.5 830,498 - Psest_0761 0.27 +0.6 830,522 - Psest_0761 0.29 +0.4 830,562 - Psest_0761 0.33 -0.4 830,577 + Psest_0761 0.34 +1.0 830,577 + Psest_0761 0.34 -0.5 830,577 + Psest_0761 0.34 -0.7 830,577 + Psest_0761 0.34 +0.3 830,654 + Psest_0761 0.41 +2.1 830,654 + Psest_0761 0.41 -1.2 830,654 + Psest_0761 0.41 -0.2 830,654 + Psest_0761 0.41 -0.4 830,654 + Psest_0761 0.41 -0.3 830,654 + Psest_0761 0.41 +0.1 830,654 + Psest_0761 0.41 -0.4 830,654 + Psest_0761 0.41 -0.2 830,654 + Psest_0761 0.41 +0.2 830,654 + Psest_0761 0.41 -0.3 830,655 - Psest_0761 0.41 -0.0 830,655 - Psest_0761 0.41 +0.8 830,655 - Psest_0761 0.41 -1.0 830,655 - Psest_0761 0.41 +0.2 830,655 - Psest_0761 0.41 +2.8 830,655 - Psest_0761 0.41 -0.0 830,655 - Psest_0761 0.41 +0.6 830,655 - Psest_0761 0.41 +0.8 830,655 - Psest_0761 0.41 -0.2 830,655 - Psest_0761 0.41 -0.8 830,753 + Psest_0761 0.50 +0.2 830,754 - Psest_0761 0.50 -0.8 830,754 - Psest_0761 0.50 -1.2 830,774 + Psest_0761 0.52 -0.8 830,775 - Psest_0761 0.52 +0.7 830,775 - Psest_0761 0.52 +0.2 830,775 - Psest_0761 0.52 -0.1 830,775 - Psest_0761 0.52 +2.8 830,775 - Psest_0761 0.52 -1.2 830,775 - Psest_0761 0.52 -0.5 830,825 + Psest_0761 0.56 -0.4 830,825 + Psest_0761 0.56 +1.8 831,034 + Psest_0761 0.75 -0.3 831,035 - Psest_0761 0.75 -0.5 831,035 - Psest_0761 0.75 +0.8 831,055 + Psest_0761 0.77 -0.8 831,055 + Psest_0761 0.77 +1.0 831,055 + Psest_0761 0.77 -0.5 831,115 + Psest_0761 0.82 -0.2 831,115 + Psest_0761 0.82 -0.5 831,115 + Psest_0761 0.82 +0.8 831,115 + Psest_0761 0.82 +0.2 831,115 + Psest_0761 0.82 -0.2 831,115 + Psest_0761 0.82 +0.8 831,115 + Psest_0761 0.82 -2.1 831,115 + Psest_0761 0.82 -0.1 831,115 + Psest_0761 0.82 +1.4 831,115 + Psest_0761 0.82 +1.8 831,115 + Psest_0761 0.82 +1.8 831,115 + Psest_0761 0.82 +0.9 831,115 + Psest_0761 0.82 -2.2 831,116 - Psest_0761 0.82 -1.2 831,116 - Psest_0761 0.82 -0.7 831,116 - Psest_0761 0.82 +1.8 831,116 - Psest_0761 0.82 +0.6 831,116 - Psest_0761 0.82 -1.0 831,116 - Psest_0761 0.82 +2.2 831,116 - Psest_0761 0.82 +0.2 831,116 - Psest_0761 0.82 +0.8 831,116 - Psest_0761 0.82 +0.4 831,116 - Psest_0761 0.82 -0.9 831,116 - Psest_0761 0.82 +2.1 831,116 - Psest_0761 0.82 +1.0 831,116 - Psest_0761 0.82 -0.0 831,116 - Psest_0761 0.82 +0.3 831,118 + Psest_0761 0.82 +0.8 831,118 + Psest_0761 0.82 -1.4 831,118 + Psest_0761 0.82 +1.5 831,118 + Psest_0761 0.82 +0.2 831,118 + Psest_0761 0.82 +0.2 831,118 + Psest_0761 0.82 +0.8 831,118 + Psest_0761 0.82 -1.3 831,118 + Psest_0761 0.82 -0.2 831,118 + Psest_0761 0.82 +0.5 831,118 + Psest_0761 0.82 +0.5 831,119 - Psest_0761 0.82 -1.5 831,119 - Psest_0761 0.82 +0.2 831,119 - Psest_0761 0.82 -1.7 831,119 - Psest_0761 0.82 +0.2 831,119 - Psest_0761 0.82 -0.1 831,119 - Psest_0761 0.82 -0.8 831,119 - Psest_0761 0.82 -0.9 831,119 - Psest_0761 0.82 -0.1 831,198 + Psest_0761 0.89 +0.4 831,508 + Psest_0762 0.15 -0.6 831,727 + Psest_0762 0.31 +0.8 831,727 + Psest_0762 0.31 +0.4 831,728 - Psest_0762 0.32 -0.5 831,728 - Psest_0762 0.32 +2.8 831,728 - Psest_0762 0.32 +0.4 831,744 - Psest_0762 0.33 -0.1 831,878 - Psest_0762 0.43 -0.1 831,976 + Psest_0762 0.51 -0.5 831,976 + Psest_0762 0.51 +1.0 831,976 + Psest_0762 0.51 +1.4 831,976 + Psest_0762 0.51 +1.8 831,976 + Psest_0762 0.51 -0.3 831,977 - Psest_0762 0.51 +0.7 831,977 - Psest_0762 0.51 -0.8 831,977 - Psest_0762 0.51 +0.2 831,977 - Psest_0762 0.51 -1.0 831,977 - Psest_0762 0.51 -1.0 831,982 + Psest_0762 0.51 -1.0 832,001 + Psest_0762 0.53 -1.0 832,002 - Psest_0762 0.53 +0.5 832,129 + Psest_0762 0.62 +1.8 832,129 + Psest_0762 0.62 +1.8 832,129 + Psest_0762 0.62 +0.7 832,129 + Psest_0762 0.62 +1.0 832,129 + Psest_0762 0.62 +0.4 832,129 + Psest_0762 0.62 -0.5 832,129 + Psest_0762 0.62 -0.8 832,130 - Psest_0762 0.63 -0.2 832,160 - Psest_0762 0.65 -0.2 832,201 + Psest_0762 0.68 -0.2 832,201 + Psest_0762 0.68 +0.0 832,202 - Psest_0762 0.68 -1.0 832,202 - Psest_0762 0.68 +1.3
Or see this region's nucleotide sequence