Experiment: Nitrate/ lactate media with Nitrate 250mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0407 and Psest_0408 are separated by 135 nucleotides Psest_0408 and Psest_0409 are separated by 489 nucleotides
Psest_0407: Psest_0407 - Dioxygenases related to 2-nitropropane dioxygenase, at 442,238 to 443,281
_0407
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 442.495 kb on + strand, within Psest_0407 at 442.566 kb on + strand, within Psest_0407 at 442.577 kb on + strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.583 kb on + strand, within Psest_0407 at 442.584 kb on - strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.092 kb on - strand, within Psest_0407 at 443.325 kb on + strand at 443.487 kb on + strand at 443.556 kb on - strand, within Psest_0408 at 443.584 kb on + strand, within Psest_0408 at 443.655 kb on - strand, within Psest_0408 at 443.700 kb on - strand, within Psest_0408 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.757 kb on - strand at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM remove 442,495 + Psest_0407 0.25 -0.6 442,566 + Psest_0407 0.31 -1.0 442,577 + Psest_0407 0.32 +1.8 442,578 - Psest_0407 0.33 -0.4 442,578 - Psest_0407 0.33 +0.1 442,578 - Psest_0407 0.33 -1.4 442,578 - Psest_0407 0.33 +0.8 442,583 + Psest_0407 0.33 +0.3 442,584 - Psest_0407 0.33 +0.1 443,091 + Psest_0407 0.82 +0.8 443,091 + Psest_0407 0.82 +1.3 443,091 + Psest_0407 0.82 -0.7 443,092 - Psest_0407 0.82 +0.0 443,325 + -0.2 443,487 + -0.6 443,556 - Psest_0408 0.16 +0.1 443,584 + Psest_0408 0.20 -0.8 443,655 - Psest_0408 0.28 -1.6 443,700 - Psest_0408 0.33 -0.4 443,953 + Psest_0408 0.63 -0.7 443,954 - Psest_0408 0.63 -0.2 444,035 + Psest_0408 0.73 -1.0 444,035 + Psest_0408 0.73 -1.9 444,036 - Psest_0408 0.73 -1.3 444,253 + -1.3 444,254 - +1.1 444,310 + +1.3 444,310 + -2.1 444,310 + +0.0 444,310 + -1.2 444,311 - +1.4 444,311 - +3.4 444,311 - +0.1 444,467 - -1.5 444,467 - +1.8 444,467 - -1.6 444,467 - +1.0 444,467 - -0.2 444,467 - +0.3 444,467 - +0.3 444,467 - -0.3 444,467 - -0.5 444,622 + +1.8 444,622 + -0.4 444,622 + -0.2 444,622 + -1.1 444,622 + +0.3 444,711 + +0.5 444,711 + +1.1 444,711 + +0.3 444,711 + -0.5 444,711 + -0.0 444,712 - -0.2 444,712 - +0.3 444,712 - -0.2 444,712 - +0.7 444,712 - -1.1 444,712 - -1.4 444,712 - -0.9 444,712 - +0.5 444,712 - +1.1 444,712 - -0.2 444,712 - +0.8 444,712 - +0.4 444,712 - -0.2 444,712 - -0.7 444,757 - +0.8 444,903 + Psest_0409 0.15 +0.8 444,903 + Psest_0409 0.15 +0.3 445,219 - Psest_0409 0.48 -0.4
Or see this region's nucleotide sequence