Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3906

Experiment: Nitrate/ lactate media with Nitrate 250mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3905 and Psest_3906 are separated by 46 nucleotidesPsest_3906 and Psest_3907 are separated by 176 nucleotidesPsest_3907 and Psest_3908 are separated by 67 nucleotides Psest_3905: Psest_3905 - formate dehydrogenase, alpha subunit, archaeal-type, at 4,073,789 to 4,075,885 _3905 Psest_3906: Psest_3906 - hypothetical protein, at 4,075,932 to 4,076,459 _3906 Psest_3907: Psest_3907 - Uncharacterized conserved protein, at 4,076,636 to 4,077,310 _3907 Psest_3908: Psest_3908 - Cytochrome c553, at 4,077,378 to 4,077,716 _3908 Position (kb) 4075 4076 4077Strain fitness (log2 ratio) -2 -1 0 1 2at 4074.983 kb on - strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.551 kb on + strand, within Psest_3905at 4075.552 kb on - strand, within Psest_3905at 4075.552 kb on - strand, within Psest_3905at 4075.555 kb on + strand, within Psest_3905at 4075.555 kb on + strand, within Psest_3905at 4075.760 kb on + strandat 4075.761 kb on - strandat 4075.761 kb on - strandat 4075.865 kb on + strandat 4075.866 kb on - strandat 4075.866 kb on - strandat 4075.866 kb on - strandat 4075.866 kb on - strandat 4075.866 kb on - strandat 4075.936 kb on + strandat 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.092 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.122 kb on + strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.123 kb on - strand, within Psest_3906at 4076.339 kb on - strand, within Psest_3906at 4076.339 kb on - strand, within Psest_3906at 4076.459 kb on + strandat 4076.460 kb on - strandat 4076.460 kb on - strandat 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.811 kb on + strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.812 kb on - strand, within Psest_3907at 4076.916 kb on + strand, within Psest_3907at 4077.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 250mM
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4,074,983 - Psest_3905 0.57 +1.0
4,075,551 + Psest_3905 0.84 -0.1
4,075,551 + Psest_3905 0.84 +0.1
4,075,551 + Psest_3905 0.84 -1.0
4,075,551 + Psest_3905 0.84 -0.2
4,075,551 + Psest_3905 0.84 +0.8
4,075,551 + Psest_3905 0.84 +0.2
4,075,552 - Psest_3905 0.84 -1.0
4,075,552 - Psest_3905 0.84 +0.2
4,075,555 + Psest_3905 0.84 +1.1
4,075,555 + Psest_3905 0.84 -0.0
4,075,760 + -0.8
4,075,761 - +1.8
4,075,761 - -0.3
4,075,865 + -0.5
4,075,866 - +0.8
4,075,866 - +0.1
4,075,866 - -1.2
4,075,866 - +2.2
4,075,866 - +0.0
4,075,936 + -1.0
4,076,092 + Psest_3906 0.30 -1.7
4,076,092 + Psest_3906 0.30 -2.5
4,076,092 + Psest_3906 0.30 +1.3
4,076,092 + Psest_3906 0.30 +0.5
4,076,092 + Psest_3906 0.30 -1.0
4,076,092 + Psest_3906 0.30 +1.0
4,076,092 + Psest_3906 0.30 +0.5
4,076,092 + Psest_3906 0.30 +0.2
4,076,092 + Psest_3906 0.30 +0.2
4,076,092 + Psest_3906 0.30 +0.2
4,076,122 + Psest_3906 0.36 -0.7
4,076,122 + Psest_3906 0.36 +1.0
4,076,122 + Psest_3906 0.36 +1.0
4,076,122 + Psest_3906 0.36 -0.5
4,076,122 + Psest_3906 0.36 -1.0
4,076,122 + Psest_3906 0.36 +0.6
4,076,122 + Psest_3906 0.36 -1.2
4,076,122 + Psest_3906 0.36 -1.5
4,076,122 + Psest_3906 0.36 +0.4
4,076,123 - Psest_3906 0.36 +0.8
4,076,123 - Psest_3906 0.36 -0.9
4,076,123 - Psest_3906 0.36 +0.5
4,076,123 - Psest_3906 0.36 +0.5
4,076,123 - Psest_3906 0.36 +0.3
4,076,123 - Psest_3906 0.36 +0.8
4,076,123 - Psest_3906 0.36 -0.3
4,076,339 - Psest_3906 0.77 +1.0
4,076,339 - Psest_3906 0.77 +2.2
4,076,459 + -0.1
4,076,460 - -0.2
4,076,460 - -0.0
4,076,811 + Psest_3907 0.26 -0.4
4,076,811 + Psest_3907 0.26 -0.6
4,076,811 + Psest_3907 0.26 +2.4
4,076,811 + Psest_3907 0.26 -0.5
4,076,811 + Psest_3907 0.26 +0.8
4,076,811 + Psest_3907 0.26 -1.2
4,076,811 + Psest_3907 0.26 +0.0
4,076,811 + Psest_3907 0.26 -1.5
4,076,811 + Psest_3907 0.26 -0.6
4,076,811 + Psest_3907 0.26 +0.4
4,076,811 + Psest_3907 0.26 +0.3
4,076,811 + Psest_3907 0.26 -1.5
4,076,811 + Psest_3907 0.26 -1.8
4,076,812 - Psest_3907 0.26 -0.6
4,076,812 - Psest_3907 0.26 +0.8
4,076,812 - Psest_3907 0.26 +0.2
4,076,812 - Psest_3907 0.26 -0.5
4,076,812 - Psest_3907 0.26 +1.8
4,076,812 - Psest_3907 0.26 -0.2
4,076,812 - Psest_3907 0.26 -2.1
4,076,812 - Psest_3907 0.26 -0.9
4,076,812 - Psest_3907 0.26 +0.2
4,076,812 - Psest_3907 0.26 +0.8
4,076,812 - Psest_3907 0.26 -0.1
4,076,812 - Psest_3907 0.26 -0.2
4,076,812 - Psest_3907 0.26 +1.2
4,076,812 - Psest_3907 0.26 -0.3
4,076,812 - Psest_3907 0.26 -0.3
4,076,812 - Psest_3907 0.26 +1.1
4,076,812 - Psest_3907 0.26 +1.8
4,076,812 - Psest_3907 0.26 +0.8
4,076,812 - Psest_3907 0.26 -1.0
4,076,812 - Psest_3907 0.26 -0.6
4,076,812 - Psest_3907 0.26 -0.4
4,076,812 - Psest_3907 0.26 +0.4
4,076,812 - Psest_3907 0.26 -0.2
4,076,916 + Psest_3907 0.41 -0.4
4,077,339 + -1.1

Or see this region's nucleotide sequence