Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4023

Experiment: Nitrate/ lactate media with Nitrate 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4022 and Psest_4023 are separated by 30 nucleotidesPsest_4023 and Psest_4024 are separated by 784 nucleotides Psest_4022: Psest_4022 - hypothetical protein, at 4,197,469 to 4,198,956 _4022 Psest_4023: Psest_4023 - hypothetical protein, at 4,198,987 to 4,199,574 _4023 Psest_4024: Psest_4024 - Uncharacterized conserved protein, at 4,200,359 to 4,201,303 _4024 Position (kb) 4198 4199 4200Strain fitness (log2 ratio) -2 -1 0 1 2at 4198.020 kb on - strand, within Psest_4022at 4198.108 kb on + strand, within Psest_4022at 4198.108 kb on + strand, within Psest_4022at 4198.108 kb on + strand, within Psest_4022at 4198.108 kb on + strand, within Psest_4022at 4198.159 kb on + strand, within Psest_4022at 4198.159 kb on + strand, within Psest_4022at 4198.159 kb on + strand, within Psest_4022at 4198.160 kb on - strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.262 kb on + strand, within Psest_4022at 4198.263 kb on - strand, within Psest_4022at 4198.263 kb on - strand, within Psest_4022at 4198.263 kb on - strand, within Psest_4022at 4198.263 kb on - strand, within Psest_4022at 4198.263 kb on - strand, within Psest_4022at 4198.301 kb on + strand, within Psest_4022at 4198.302 kb on - strand, within Psest_4022at 4198.363 kb on + strand, within Psest_4022at 4198.447 kb on + strand, within Psest_4022at 4198.447 kb on + strand, within Psest_4022at 4198.447 kb on + strand, within Psest_4022at 4198.447 kb on + strand, within Psest_4022at 4198.447 kb on + strand, within Psest_4022at 4198.448 kb on - strand, within Psest_4022at 4198.448 kb on - strand, within Psest_4022at 4198.448 kb on - strand, within Psest_4022at 4198.448 kb on - strand, within Psest_4022at 4198.448 kb on - strand, within Psest_4022at 4198.511 kb on + strand, within Psest_4022at 4198.511 kb on + strand, within Psest_4022at 4198.512 kb on - strand, within Psest_4022at 4198.512 kb on - strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.516 kb on + strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.517 kb on - strand, within Psest_4022at 4198.633 kb on + strand, within Psest_4022at 4198.633 kb on + strand, within Psest_4022at 4198.634 kb on - strand, within Psest_4022at 4198.681 kb on + strand, within Psest_4022at 4198.899 kb on - strandat 4198.948 kb on + strandat 4198.948 kb on + strandat 4198.948 kb on + strandat 4198.948 kb on + strandat 4198.949 kb on - strandat 4198.949 kb on - strandat 4198.949 kb on - strandat 4198.949 kb on - strandat 4198.954 kb on + strandat 4198.955 kb on - strandat 4198.955 kb on - strandat 4198.959 kb on - strandat 4198.959 kb on - strandat 4198.959 kb on - strandat 4199.195 kb on - strand, within Psest_4023at 4199.195 kb on - strand, within Psest_4023at 4199.206 kb on - strand, within Psest_4023at 4199.393 kb on + strand, within Psest_4023at 4199.393 kb on + strand, within Psest_4023at 4199.455 kb on - strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.490 kb on + strand, within Psest_4023at 4199.491 kb on - strand, within Psest_4023at 4199.491 kb on - strand, within Psest_4023at 4199.521 kb on + strandat 4199.521 kb on + strandat 4199.522 kb on - strandat 4199.522 kb on - strandat 4199.522 kb on - strandat 4199.522 kb on - strandat 4199.532 kb on + strandat 4199.532 kb on + strandat 4199.532 kb on + strandat 4199.532 kb on + strandat 4199.532 kb on + strandat 4199.533 kb on - strandat 4199.533 kb on - strandat 4199.533 kb on - strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.575 kb on + strandat 4199.576 kb on - strandat 4199.576 kb on - strandat 4199.576 kb on - strandat 4199.643 kb on + strandat 4199.643 kb on + strandat 4199.643 kb on + strandat 4199.643 kb on + strandat 4199.643 kb on + strandat 4199.644 kb on - strandat 4199.644 kb on - strandat 4199.645 kb on + strandat 4199.652 kb on - strandat 4199.658 kb on - strandat 4199.725 kb on - strandat 4199.740 kb on + strandat 4199.759 kb on - strandat 4199.761 kb on + strandat 4199.761 kb on + strandat 4199.777 kb on - strandat 4199.777 kb on - strandat 4199.784 kb on + strandat 4199.784 kb on + strandat 4199.784 kb on + strandat 4199.785 kb on - strandat 4199.785 kb on - strandat 4199.864 kb on + strandat 4199.864 kb on + strandat 4199.864 kb on + strandat 4199.865 kb on - strandat 4199.865 kb on - strandat 4199.865 kb on - strandat 4199.865 kb on - strandat 4199.865 kb on - strandat 4199.865 kb on - strandat 4199.900 kb on - strandat 4200.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 50mM
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4,198,020 - Psest_4022 0.37 +0.8
4,198,108 + Psest_4022 0.43 -0.1
4,198,108 + Psest_4022 0.43 +0.2
4,198,108 + Psest_4022 0.43 +0.4
4,198,108 + Psest_4022 0.43 -0.2
4,198,159 + Psest_4022 0.46 -0.6
4,198,159 + Psest_4022 0.46 -0.2
4,198,159 + Psest_4022 0.46 +0.4
4,198,160 - Psest_4022 0.46 -0.2
4,198,262 + Psest_4022 0.53 +0.6
4,198,262 + Psest_4022 0.53 +0.7
4,198,262 + Psest_4022 0.53 +0.4
4,198,262 + Psest_4022 0.53 +0.3
4,198,262 + Psest_4022 0.53 -0.6
4,198,262 + Psest_4022 0.53 +1.0
4,198,262 + Psest_4022 0.53 +0.3
4,198,262 + Psest_4022 0.53 -1.2
4,198,263 - Psest_4022 0.53 -0.2
4,198,263 - Psest_4022 0.53 +0.1
4,198,263 - Psest_4022 0.53 -0.3
4,198,263 - Psest_4022 0.53 +0.2
4,198,263 - Psest_4022 0.53 -0.7
4,198,301 + Psest_4022 0.56 +1.4
4,198,302 - Psest_4022 0.56 -1.0
4,198,363 + Psest_4022 0.60 -1.9
4,198,447 + Psest_4022 0.66 -0.1
4,198,447 + Psest_4022 0.66 -0.4
4,198,447 + Psest_4022 0.66 +0.7
4,198,447 + Psest_4022 0.66 +0.4
4,198,447 + Psest_4022 0.66 +0.2
4,198,448 - Psest_4022 0.66 +2.4
4,198,448 - Psest_4022 0.66 +0.2
4,198,448 - Psest_4022 0.66 -0.9
4,198,448 - Psest_4022 0.66 +0.4
4,198,448 - Psest_4022 0.66 +0.7
4,198,511 + Psest_4022 0.70 +0.4
4,198,511 + Psest_4022 0.70 -1.2
4,198,512 - Psest_4022 0.70 +0.4
4,198,512 - Psest_4022 0.70 -0.4
4,198,516 + Psest_4022 0.70 -0.1
4,198,516 + Psest_4022 0.70 -0.1
4,198,516 + Psest_4022 0.70 -0.4
4,198,516 + Psest_4022 0.70 +0.4
4,198,516 + Psest_4022 0.70 +0.2
4,198,516 + Psest_4022 0.70 +0.7
4,198,516 + Psest_4022 0.70 +0.4
4,198,516 + Psest_4022 0.70 -1.0
4,198,516 + Psest_4022 0.70 +0.3
4,198,516 + Psest_4022 0.70 -0.9
4,198,516 + Psest_4022 0.70 +0.8
4,198,516 + Psest_4022 0.70 +0.1
4,198,516 + Psest_4022 0.70 -0.6
4,198,517 - Psest_4022 0.70 +0.8
4,198,517 - Psest_4022 0.70 +0.5
4,198,517 - Psest_4022 0.70 -0.2
4,198,517 - Psest_4022 0.70 -0.1
4,198,517 - Psest_4022 0.70 +0.2
4,198,517 - Psest_4022 0.70 -0.6
4,198,517 - Psest_4022 0.70 -1.6
4,198,517 - Psest_4022 0.70 +0.0
4,198,517 - Psest_4022 0.70 -0.2
4,198,517 - Psest_4022 0.70 +0.8
4,198,517 - Psest_4022 0.70 -0.4
4,198,517 - Psest_4022 0.70 +0.1
4,198,633 + Psest_4022 0.78 -0.5
4,198,633 + Psest_4022 0.78 +1.4
4,198,634 - Psest_4022 0.78 +0.9
4,198,681 + Psest_4022 0.81 -1.1
4,198,899 - -0.5
4,198,948 + -0.1
4,198,948 + +0.2
4,198,948 + -0.1
4,198,948 + -0.1
4,198,949 - -0.9
4,198,949 - -0.8
4,198,949 - +0.2
4,198,949 - +0.4
4,198,954 + +0.0
4,198,955 - -0.8
4,198,955 - +0.4
4,198,959 - -0.9
4,198,959 - -0.3
4,198,959 - +0.1
4,199,195 - Psest_4023 0.35 -0.4
4,199,195 - Psest_4023 0.35 -1.6
4,199,206 - Psest_4023 0.37 -0.1
4,199,393 + Psest_4023 0.69 -1.8
4,199,393 + Psest_4023 0.69 -1.4
4,199,455 - Psest_4023 0.80 -0.0
4,199,490 + Psest_4023 0.86 -0.7
4,199,490 + Psest_4023 0.86 -0.4
4,199,490 + Psest_4023 0.86 -2.4
4,199,490 + Psest_4023 0.86 -0.3
4,199,490 + Psest_4023 0.86 +0.1
4,199,490 + Psest_4023 0.86 -0.1
4,199,490 + Psest_4023 0.86 -0.8
4,199,491 - Psest_4023 0.86 +0.4
4,199,491 - Psest_4023 0.86 -0.9
4,199,521 + -0.2
4,199,521 + +0.6
4,199,522 - -2.2
4,199,522 - +1.1
4,199,522 - -2.2
4,199,522 - -0.7
4,199,532 + +1.6
4,199,532 + -0.7
4,199,532 + +0.1
4,199,532 + +2.0
4,199,532 + +0.3
4,199,533 - +1.4
4,199,533 - +0.8
4,199,533 - +1.4
4,199,575 + -0.8
4,199,575 + +0.4
4,199,575 + -0.1
4,199,575 + -0.6
4,199,575 + +0.1
4,199,575 + -0.3
4,199,575 + +0.4
4,199,576 - -0.6
4,199,576 - -0.8
4,199,576 - +0.4
4,199,643 + -0.2
4,199,643 + -0.8
4,199,643 + -1.4
4,199,643 + +0.7
4,199,643 + +0.4
4,199,644 - +0.4
4,199,644 - -0.1
4,199,645 + +0.7
4,199,652 - +0.7
4,199,658 - +0.2
4,199,725 - +0.5
4,199,740 + +0.1
4,199,759 - +0.9
4,199,761 + -0.2
4,199,761 + -1.2
4,199,777 - +1.0
4,199,777 - +0.4
4,199,784 + +0.4
4,199,784 + -0.9
4,199,784 + -0.6
4,199,785 - +0.4
4,199,785 - +1.0
4,199,864 + -0.6
4,199,864 + +0.4
4,199,864 + +1.2
4,199,865 - +1.1
4,199,865 - +0.2
4,199,865 - -0.1
4,199,865 - +0.4
4,199,865 - +0.7
4,199,865 - +0.0
4,199,900 - -0.3
4,200,027 - +0.1

Or see this region's nucleotide sequence