Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2921

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2919 and Psest_2920 are separated by 25 nucleotidesPsest_2920 and Psest_2921 are separated by 180 nucleotidesPsest_2921 and Psest_2922 are separated by 17 nucleotides Psest_2919: Psest_2919 - hypothetical protein, at 3,111,668 to 3,112,216 _2919 Psest_2920: Psest_2920 - hypothetical protein, at 3,112,242 to 3,112,430 _2920 Psest_2921: Psest_2921 - hypothetical protein, at 3,112,611 to 3,113,474 _2921 Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919 _2922 Position (kb) 3112 3113 3114Strain fitness (log2 ratio) -1 0 1 2at 3111.656 kb on - strandat 3111.656 kb on - strandat 3111.773 kb on + strand, within Psest_2919at 3111.774 kb on - strand, within Psest_2919at 3111.830 kb on + strand, within Psest_2919at 3111.831 kb on - strand, within Psest_2919at 3111.897 kb on - strand, within Psest_2919at 3111.897 kb on - strand, within Psest_2919at 3112.001 kb on + strand, within Psest_2919at 3112.002 kb on - strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.010 kb on + strand, within Psest_2919at 3112.011 kb on - strand, within Psest_2919at 3112.011 kb on - strand, within Psest_2919at 3112.011 kb on - strand, within Psest_2919at 3112.011 kb on - strand, within Psest_2919at 3112.011 kb on - strand, within Psest_2919at 3112.044 kb on + strand, within Psest_2919at 3112.044 kb on + strand, within Psest_2919at 3112.045 kb on - strand, within Psest_2919at 3112.058 kb on + strand, within Psest_2919at 3112.058 kb on + strand, within Psest_2919at 3112.173 kb on - strandat 3112.173 kb on - strandat 3112.218 kb on + strandat 3112.219 kb on - strandat 3112.392 kb on + strand, within Psest_2920at 3112.579 kb on - strandat 3112.579 kb on - strandat 3112.633 kb on + strandat 3112.826 kb on - strand, within Psest_2921at 3112.899 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.044 kb on - strand, within Psest_2921at 3113.110 kb on - strand, within Psest_2921at 3113.150 kb on - strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.607 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.833 kb on - strandat 3113.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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3,111,656 - +0.0
3,111,656 - -1.0
3,111,773 + Psest_2919 0.19 -0.5
3,111,774 - Psest_2919 0.19 -0.8
3,111,830 + Psest_2919 0.30 -1.3
3,111,831 - Psest_2919 0.30 -1.0
3,111,897 - Psest_2919 0.42 +2.4
3,111,897 - Psest_2919 0.42 +0.0
3,112,001 + Psest_2919 0.61 +0.7
3,112,002 - Psest_2919 0.61 +1.0
3,112,010 + Psest_2919 0.62 -0.4
3,112,010 + Psest_2919 0.62 -1.2
3,112,010 + Psest_2919 0.62 -0.2
3,112,010 + Psest_2919 0.62 +0.8
3,112,010 + Psest_2919 0.62 -0.1
3,112,010 + Psest_2919 0.62 -1.2
3,112,010 + Psest_2919 0.62 -0.3
3,112,010 + Psest_2919 0.62 +1.0
3,112,011 - Psest_2919 0.62 -1.2
3,112,011 - Psest_2919 0.62 +0.1
3,112,011 - Psest_2919 0.62 +0.3
3,112,011 - Psest_2919 0.62 -0.2
3,112,011 - Psest_2919 0.62 -1.0
3,112,044 + Psest_2919 0.68 +0.4
3,112,044 + Psest_2919 0.68 +0.3
3,112,045 - Psest_2919 0.69 +0.2
3,112,058 + Psest_2919 0.71 -1.5
3,112,058 + Psest_2919 0.71 -0.7
3,112,173 - +0.4
3,112,173 - +0.0
3,112,218 + -0.8
3,112,219 - +0.0
3,112,392 + Psest_2920 0.79 +1.0
3,112,579 - +1.7
3,112,579 - +0.6
3,112,633 + -1.3
3,112,826 - Psest_2921 0.25 +1.3
3,112,899 + Psest_2921 0.33 -0.9
3,113,043 + Psest_2921 0.50 +0.0
3,113,043 + Psest_2921 0.50 +1.6
3,113,043 + Psest_2921 0.50 +0.4
3,113,044 - Psest_2921 0.50 +0.4
3,113,110 - Psest_2921 0.58 +1.2
3,113,150 - Psest_2921 0.62 +0.1
3,113,375 + Psest_2921 0.88 -0.2
3,113,375 + Psest_2921 0.88 +0.4
3,113,375 + Psest_2921 0.88 +0.7
3,113,375 + Psest_2921 0.88 -0.1
3,113,375 + Psest_2921 0.88 -0.6
3,113,375 + Psest_2921 0.88 +0.2
3,113,376 - Psest_2921 0.89 -0.6
3,113,376 - Psest_2921 0.89 -1.2
3,113,376 - Psest_2921 0.89 +1.3
3,113,376 - Psest_2921 0.89 +0.7
3,113,376 - Psest_2921 0.89 +0.7
3,113,376 - Psest_2921 0.89 +2.0
3,113,607 + -0.5
3,113,832 + -1.3
3,113,832 + -1.3
3,113,832 + +1.7
3,113,832 + -0.3
3,113,833 - -0.2
3,113,922 - -0.4

Or see this region's nucleotide sequence