Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2919 and Psest_2920 are separated by 25 nucleotides Psest_2920 and Psest_2921 are separated by 180 nucleotides Psest_2921 and Psest_2922 are separated by 17 nucleotides
Psest_2919: Psest_2919 - hypothetical protein, at 3,111,668 to 3,112,216
_2919
Psest_2920: Psest_2920 - hypothetical protein, at 3,112,242 to 3,112,430
_2920
Psest_2921: Psest_2921 - hypothetical protein, at 3,112,611 to 3,113,474
_2921
Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919
_2922
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-1
0
1
2 at 3111.656 kb on - strand at 3111.656 kb on - strand at 3111.773 kb on + strand, within Psest_2919 at 3111.774 kb on - strand, within Psest_2919 at 3111.830 kb on + strand, within Psest_2919 at 3111.831 kb on - strand, within Psest_2919 at 3111.897 kb on - strand, within Psest_2919 at 3111.897 kb on - strand, within Psest_2919 at 3112.001 kb on + strand, within Psest_2919 at 3112.002 kb on - strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.044 kb on + strand, within Psest_2919 at 3112.044 kb on + strand, within Psest_2919 at 3112.045 kb on - strand, within Psest_2919 at 3112.058 kb on + strand, within Psest_2919 at 3112.058 kb on + strand, within Psest_2919 at 3112.173 kb on - strand at 3112.173 kb on - strand at 3112.218 kb on + strand at 3112.219 kb on - strand at 3112.392 kb on + strand, within Psest_2920 at 3112.579 kb on - strand at 3112.579 kb on - strand at 3112.633 kb on + strand at 3112.826 kb on - strand, within Psest_2921 at 3112.899 kb on + strand, within Psest_2921 at 3113.043 kb on + strand, within Psest_2921 at 3113.043 kb on + strand, within Psest_2921 at 3113.043 kb on + strand, within Psest_2921 at 3113.044 kb on - strand, within Psest_2921 at 3113.110 kb on - strand, within Psest_2921 at 3113.150 kb on - strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.375 kb on + strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.376 kb on - strand, within Psest_2921 at 3113.607 kb on + strand at 3113.832 kb on + strand at 3113.832 kb on + strand at 3113.832 kb on + strand at 3113.832 kb on + strand at 3113.833 kb on - strand at 3113.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 3,111,656 - +0.0 3,111,656 - -1.0 3,111,773 + Psest_2919 0.19 -0.5 3,111,774 - Psest_2919 0.19 -0.8 3,111,830 + Psest_2919 0.30 -1.3 3,111,831 - Psest_2919 0.30 -1.0 3,111,897 - Psest_2919 0.42 +2.4 3,111,897 - Psest_2919 0.42 +0.0 3,112,001 + Psest_2919 0.61 +0.7 3,112,002 - Psest_2919 0.61 +1.0 3,112,010 + Psest_2919 0.62 -0.4 3,112,010 + Psest_2919 0.62 -1.2 3,112,010 + Psest_2919 0.62 -0.2 3,112,010 + Psest_2919 0.62 +0.8 3,112,010 + Psest_2919 0.62 -0.1 3,112,010 + Psest_2919 0.62 -1.2 3,112,010 + Psest_2919 0.62 -0.3 3,112,010 + Psest_2919 0.62 +1.0 3,112,011 - Psest_2919 0.62 -1.2 3,112,011 - Psest_2919 0.62 +0.1 3,112,011 - Psest_2919 0.62 +0.3 3,112,011 - Psest_2919 0.62 -0.2 3,112,011 - Psest_2919 0.62 -1.0 3,112,044 + Psest_2919 0.68 +0.4 3,112,044 + Psest_2919 0.68 +0.3 3,112,045 - Psest_2919 0.69 +0.2 3,112,058 + Psest_2919 0.71 -1.5 3,112,058 + Psest_2919 0.71 -0.7 3,112,173 - +0.4 3,112,173 - +0.0 3,112,218 + -0.8 3,112,219 - +0.0 3,112,392 + Psest_2920 0.79 +1.0 3,112,579 - +1.7 3,112,579 - +0.6 3,112,633 + -1.3 3,112,826 - Psest_2921 0.25 +1.3 3,112,899 + Psest_2921 0.33 -0.9 3,113,043 + Psest_2921 0.50 +0.0 3,113,043 + Psest_2921 0.50 +1.6 3,113,043 + Psest_2921 0.50 +0.4 3,113,044 - Psest_2921 0.50 +0.4 3,113,110 - Psest_2921 0.58 +1.2 3,113,150 - Psest_2921 0.62 +0.1 3,113,375 + Psest_2921 0.88 -0.2 3,113,375 + Psest_2921 0.88 +0.4 3,113,375 + Psest_2921 0.88 +0.7 3,113,375 + Psest_2921 0.88 -0.1 3,113,375 + Psest_2921 0.88 -0.6 3,113,375 + Psest_2921 0.88 +0.2 3,113,376 - Psest_2921 0.89 -0.6 3,113,376 - Psest_2921 0.89 -1.2 3,113,376 - Psest_2921 0.89 +1.3 3,113,376 - Psest_2921 0.89 +0.7 3,113,376 - Psest_2921 0.89 +0.7 3,113,376 - Psest_2921 0.89 +2.0 3,113,607 + -0.5 3,113,832 + -1.3 3,113,832 + -1.3 3,113,832 + +1.7 3,113,832 + -0.3 3,113,833 - -0.2 3,113,922 - -0.4
Or see this region's nucleotide sequence