Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2779

Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2776 and Psest_2777 overlap by 4 nucleotidesPsest_2777 and Psest_2778 are separated by 158 nucleotidesPsest_2778 and Psest_2779 are separated by 98 nucleotidesPsest_2779 and Psest_2780 are separated by 297 nucleotidesPsest_2780 and Psest_2781 are separated by 92 nucleotides Psest_2776: Psest_2776 - Uncharacterized protein conserved in bacteria, at 2,973,797 to 2,974,084 _2776 Psest_2777: Psest_2777 - hypothetical protein, at 2,974,081 to 2,974,308 _2777 Psest_2778: Psest_2778 - Parvulin-like peptidyl-prolyl isomerase, at 2,974,467 to 2,974,748 _2778 Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442 _2779 Psest_2780: Psest_2780 - Protein of unknown function (DUF3478)., at 2,976,740 to 2,977,108 _2780 Psest_2781: Psest_2781 - Domain of unknown function (DUF3597)., at 2,977,201 to 2,977,662 _2781 Position (kb) 2974 2975 2976 2977Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2974.300 kb on - strandat 2974.447 kb on - strandat 2974.653 kb on - strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.658 kb on - strand, within Psest_2778at 2975.467 kb on + strand, within Psest_2779at 2975.527 kb on + strand, within Psest_2779at 2975.527 kb on + strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.724 kb on + strand, within Psest_2779at 2975.724 kb on + strand, within Psest_2779at 2975.725 kb on - strand, within Psest_2779at 2975.986 kb on + strand, within Psest_2779at 2976.281 kb on - strand, within Psest_2779at 2976.357 kb on + strandat 2976.358 kb on - strandat 2976.404 kb on + strandat 2976.483 kb on + strandat 2976.876 kb on - strand, within Psest_2780at 2977.135 kb on + strandat 2977.135 kb on + strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.136 kb on - strandat 2977.172 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
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2,974,300 - -1.8
2,974,447 - -1.6
2,974,653 - Psest_2778 0.66 +2.5
2,974,657 + Psest_2778 0.67 -0.2
2,974,657 + Psest_2778 0.67 -1.3
2,974,657 + Psest_2778 0.67 +0.4
2,974,657 + Psest_2778 0.67 +0.0
2,974,658 - Psest_2778 0.68 +0.7
2,975,467 + Psest_2779 0.39 +1.4
2,975,527 + Psest_2779 0.43 -1.6
2,975,527 + Psest_2779 0.43 +0.2
2,975,528 - Psest_2779 0.43 -1.1
2,975,528 - Psest_2779 0.43 -0.8
2,975,528 - Psest_2779 0.43 -1.8
2,975,724 + Psest_2779 0.55 +1.0
2,975,724 + Psest_2779 0.55 -0.7
2,975,725 - Psest_2779 0.55 +0.4
2,975,986 + Psest_2779 0.71 -0.4
2,976,281 - Psest_2779 0.90 +1.0
2,976,357 + +3.0
2,976,358 - -0.7
2,976,404 + +0.4
2,976,483 + +1.0
2,976,876 - Psest_2780 0.37 -2.1
2,977,135 + +0.2
2,977,135 + +2.0
2,977,136 - -0.4
2,977,136 - -0.2
2,977,136 - +0.4
2,977,136 - -0.9
2,977,172 + -0.2

Or see this region's nucleotide sequence