Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2776 and Psest_2777 overlap by 4 nucleotides Psest_2777 and Psest_2778 are separated by 158 nucleotides Psest_2778 and Psest_2779 are separated by 98 nucleotides Psest_2779 and Psest_2780 are separated by 297 nucleotides Psest_2780 and Psest_2781 are separated by 92 nucleotides
Psest_2776: Psest_2776 - Uncharacterized protein conserved in bacteria, at 2,973,797 to 2,974,084
_2776
Psest_2777: Psest_2777 - hypothetical protein, at 2,974,081 to 2,974,308
_2777
Psest_2778: Psest_2778 - Parvulin-like peptidyl-prolyl isomerase, at 2,974,467 to 2,974,748
_2778
Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442
_2779
Psest_2780: Psest_2780 - Protein of unknown function (DUF3478)., at 2,976,740 to 2,977,108
_2780
Psest_2781: Psest_2781 - Domain of unknown function (DUF3597)., at 2,977,201 to 2,977,662
_2781
Position (kb)
2974
2975
2976
2977 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2974.300 kb on - strand at 2974.447 kb on - strand at 2974.653 kb on - strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.658 kb on - strand, within Psest_2778 at 2975.467 kb on + strand, within Psest_2779 at 2975.527 kb on + strand, within Psest_2779 at 2975.527 kb on + strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.724 kb on + strand, within Psest_2779 at 2975.724 kb on + strand, within Psest_2779 at 2975.725 kb on - strand, within Psest_2779 at 2975.986 kb on + strand, within Psest_2779 at 2976.281 kb on - strand, within Psest_2779 at 2976.357 kb on + strand at 2976.358 kb on - strand at 2976.404 kb on + strand at 2976.483 kb on + strand at 2976.876 kb on - strand, within Psest_2780 at 2977.135 kb on + strand at 2977.135 kb on + strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 2,974,300 - -1.8 2,974,447 - -1.6 2,974,653 - Psest_2778 0.66 +2.5 2,974,657 + Psest_2778 0.67 -0.2 2,974,657 + Psest_2778 0.67 -1.3 2,974,657 + Psest_2778 0.67 +0.4 2,974,657 + Psest_2778 0.67 +0.0 2,974,658 - Psest_2778 0.68 +0.7 2,975,467 + Psest_2779 0.39 +1.4 2,975,527 + Psest_2779 0.43 -1.6 2,975,527 + Psest_2779 0.43 +0.2 2,975,528 - Psest_2779 0.43 -1.1 2,975,528 - Psest_2779 0.43 -0.8 2,975,528 - Psest_2779 0.43 -1.8 2,975,724 + Psest_2779 0.55 +1.0 2,975,724 + Psest_2779 0.55 -0.7 2,975,725 - Psest_2779 0.55 +0.4 2,975,986 + Psest_2779 0.71 -0.4 2,976,281 - Psest_2779 0.90 +1.0 2,976,357 + +3.0 2,976,358 - -0.7 2,976,404 + +0.4 2,976,483 + +1.0 2,976,876 - Psest_2780 0.37 -2.1 2,977,135 + +0.2 2,977,135 + +2.0 2,977,136 - -0.4 2,977,136 - -0.2 2,977,136 - +0.4 2,977,136 - -0.9 2,977,172 + -0.2
Or see this region's nucleotide sequence