Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2477 and Psest_2478 are separated by 52 nucleotides Psest_2478 and Psest_2479 are separated by 181 nucleotides
Psest_2477: Psest_2477 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,647,461 to 2,649,090
_2477
Psest_2478: Psest_2478 - Na+/serine symporter, at 2,649,143 to 2,650,369
_2478
Psest_2479: Psest_2479 - Methyl-accepting chemotaxis protein, at 2,650,551 to 2,652,170
_2479
Position (kb)
2649
2650
2651 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2648.327 kb on + strand, within Psest_2477 at 2648.328 kb on - strand, within Psest_2477 at 2648.328 kb on - strand, within Psest_2477 at 2648.328 kb on - strand, within Psest_2477 at 2648.328 kb on - strand, within Psest_2477 at 2648.338 kb on + strand, within Psest_2477 at 2648.339 kb on - strand, within Psest_2477 at 2648.339 kb on - strand, within Psest_2477 at 2648.342 kb on - strand, within Psest_2477 at 2648.410 kb on + strand, within Psest_2477 at 2648.410 kb on + strand, within Psest_2477 at 2648.411 kb on - strand, within Psest_2477 at 2648.695 kb on + strand, within Psest_2477 at 2648.695 kb on + strand, within Psest_2477 at 2648.695 kb on + strand, within Psest_2477 at 2649.145 kb on - strand at 2649.145 kb on - strand at 2649.513 kb on + strand, within Psest_2478 at 2649.513 kb on + strand, within Psest_2478 at 2649.513 kb on + strand, within Psest_2478 at 2649.513 kb on + strand, within Psest_2478 at 2649.513 kb on + strand, within Psest_2478 at 2649.514 kb on - strand, within Psest_2478 at 2649.514 kb on - strand, within Psest_2478 at 2650.114 kb on - strand, within Psest_2478 at 2650.114 kb on - strand, within Psest_2478 at 2650.133 kb on + strand, within Psest_2478 at 2650.133 kb on + strand, within Psest_2478 at 2650.134 kb on - strand, within Psest_2478 at 2650.134 kb on - strand, within Psest_2478 at 2650.136 kb on - strand, within Psest_2478 at 2650.136 kb on - strand, within Psest_2478 at 2650.354 kb on + strand at 2650.355 kb on - strand at 2650.370 kb on - strand at 2650.441 kb on + strand at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.875 kb on + strand, within Psest_2479 at 2650.876 kb on - strand, within Psest_2479 at 2650.876 kb on - strand, within Psest_2479 at 2650.876 kb on - strand, within Psest_2479 at 2650.876 kb on - strand, within Psest_2479 at 2650.876 kb on - strand, within Psest_2479 at 2651.067 kb on - strand, within Psest_2479 at 2651.073 kb on + strand, within Psest_2479 at 2651.073 kb on + strand, within Psest_2479 at 2651.073 kb on + strand, within Psest_2479 at 2651.073 kb on + strand, within Psest_2479 at 2651.073 kb on + strand, within Psest_2479 at 2651.074 kb on - strand, within Psest_2479 at 2651.115 kb on + strand, within Psest_2479 at 2651.115 kb on + strand, within Psest_2479
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 2,648,327 + Psest_2477 0.53 -1.4 2,648,328 - Psest_2477 0.53 +0.1 2,648,328 - Psest_2477 0.53 +0.6 2,648,328 - Psest_2477 0.53 -0.1 2,648,328 - Psest_2477 0.53 +0.7 2,648,338 + Psest_2477 0.54 -0.2 2,648,339 - Psest_2477 0.54 +1.0 2,648,339 - Psest_2477 0.54 -0.5 2,648,342 - Psest_2477 0.54 -0.7 2,648,410 + Psest_2477 0.58 +0.6 2,648,410 + Psest_2477 0.58 -0.6 2,648,411 - Psest_2477 0.58 +1.7 2,648,695 + Psest_2477 0.76 -0.4 2,648,695 + Psest_2477 0.76 +0.2 2,648,695 + Psest_2477 0.76 -0.6 2,649,145 - -0.6 2,649,145 - +0.4 2,649,513 + Psest_2478 0.30 +0.7 2,649,513 + Psest_2478 0.30 -1.0 2,649,513 + Psest_2478 0.30 -1.4 2,649,513 + Psest_2478 0.30 -0.6 2,649,513 + Psest_2478 0.30 -0.4 2,649,514 - Psest_2478 0.30 -2.8 2,649,514 - Psest_2478 0.30 -0.7 2,650,114 - Psest_2478 0.79 -1.2 2,650,114 - Psest_2478 0.79 -0.1 2,650,133 + Psest_2478 0.81 -1.4 2,650,133 + Psest_2478 0.81 -1.1 2,650,134 - Psest_2478 0.81 -0.1 2,650,134 - Psest_2478 0.81 -0.4 2,650,136 - Psest_2478 0.81 +1.0 2,650,136 - Psest_2478 0.81 +0.7 2,650,354 + -0.6 2,650,355 - -0.4 2,650,370 - -2.3 2,650,441 + +0.4 2,650,875 + Psest_2479 0.20 -0.1 2,650,875 + Psest_2479 0.20 -1.1 2,650,875 + Psest_2479 0.20 -0.3 2,650,875 + Psest_2479 0.20 -0.4 2,650,875 + Psest_2479 0.20 +0.7 2,650,875 + Psest_2479 0.20 -0.6 2,650,875 + Psest_2479 0.20 +2.2 2,650,875 + Psest_2479 0.20 -0.3 2,650,876 - Psest_2479 0.20 -0.0 2,650,876 - Psest_2479 0.20 +0.2 2,650,876 - Psest_2479 0.20 -0.4 2,650,876 - Psest_2479 0.20 +1.7 2,650,876 - Psest_2479 0.20 +0.2 2,651,067 - Psest_2479 0.32 +2.0 2,651,073 + Psest_2479 0.32 -0.6 2,651,073 + Psest_2479 0.32 +1.6 2,651,073 + Psest_2479 0.32 +1.4 2,651,073 + Psest_2479 0.32 +0.4 2,651,073 + Psest_2479 0.32 -0.6 2,651,074 - Psest_2479 0.32 +2.2 2,651,115 + Psest_2479 0.35 -0.2 2,651,115 + Psest_2479 0.35 +1.7
Or see this region's nucleotide sequence