Experiment: Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2267 and Psest_2268 overlap by 17 nucleotides Psest_2268 and Psest_2269 are separated by 107 nucleotides
Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144
_2267
Psest_2268: Psest_2268 - Alcohol dehydrogenase, class IV, at 2,417,128 to 2,418,291
_2268
Psest_2269: Psest_2269 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 2,418,399 to 2,420,312
_2269
Position (kb)
2417
2418
2419 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2416.175 kb on + strand, within Psest_2267 at 2416.339 kb on + strand, within Psest_2267 at 2416.339 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.611 kb on - strand, within Psest_2267 at 2416.611 kb on - strand, within Psest_2267 at 2416.684 kb on - strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.821 kb on - strand, within Psest_2267 at 2416.821 kb on - strand, within Psest_2267 at 2417.100 kb on + strand at 2417.100 kb on + strand at 2417.402 kb on + strand, within Psest_2268 at 2417.402 kb on + strand, within Psest_2268 at 2417.402 kb on + strand, within Psest_2268 at 2417.403 kb on - strand, within Psest_2268 at 2417.764 kb on + strand, within Psest_2268 at 2417.764 kb on + strand, within Psest_2268 at 2417.928 kb on - strand, within Psest_2268 at 2418.178 kb on + strand at 2418.179 kb on - strand at 2418.179 kb on - strand at 2418.179 kb on - strand at 2418.306 kb on + strand at 2418.334 kb on - strand at 2418.334 kb on - strand at 2418.334 kb on - strand at 2418.416 kb on - strand at 2418.488 kb on - strand at 2418.619 kb on + strand, within Psest_2269 at 2418.619 kb on + strand, within Psest_2269 at 2418.619 kb on + strand, within Psest_2269 at 2418.620 kb on - strand, within Psest_2269 at 2418.620 kb on - strand, within Psest_2269 at 2418.620 kb on - strand, within Psest_2269 at 2418.620 kb on - strand, within Psest_2269 at 2418.685 kb on + strand, within Psest_2269 at 2418.686 kb on - strand, within Psest_2269 at 2418.686 kb on - strand, within Psest_2269 at 2418.799 kb on + strand, within Psest_2269 at 2418.799 kb on + strand, within Psest_2269 at 2418.799 kb on + strand, within Psest_2269 at 2418.800 kb on - strand, within Psest_2269 at 2419.027 kb on + strand, within Psest_2269 at 2419.079 kb on + strand, within Psest_2269 at 2419.080 kb on - strand, within Psest_2269
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten remove 2,416,175 + Psest_2267 0.43 +0.5 2,416,339 + Psest_2267 0.53 -0.3 2,416,339 + Psest_2267 0.53 -0.5 2,416,549 + Psest_2267 0.65 +1.8 2,416,549 + Psest_2267 0.65 -1.6 2,416,549 + Psest_2267 0.65 -0.2 2,416,550 - Psest_2267 0.65 +1.2 2,416,550 - Psest_2267 0.65 -0.1 2,416,550 - Psest_2267 0.65 -0.2 2,416,550 - Psest_2267 0.65 +0.9 2,416,550 - Psest_2267 0.65 +0.2 2,416,611 - Psest_2267 0.69 -0.2 2,416,611 - Psest_2267 0.69 -2.8 2,416,684 - Psest_2267 0.73 -0.8 2,416,750 + Psest_2267 0.77 -0.2 2,416,750 + Psest_2267 0.77 -0.1 2,416,750 + Psest_2267 0.77 +0.8 2,416,750 + Psest_2267 0.77 +0.2 2,416,750 + Psest_2267 0.77 +1.8 2,416,750 + Psest_2267 0.77 +1.2 2,416,750 + Psest_2267 0.77 +1.4 2,416,751 - Psest_2267 0.77 -0.1 2,416,751 - Psest_2267 0.77 -0.2 2,416,751 - Psest_2267 0.77 -0.3 2,416,751 - Psest_2267 0.77 +0.1 2,416,820 + Psest_2267 0.81 -0.2 2,416,820 + Psest_2267 0.81 -0.4 2,416,820 + Psest_2267 0.81 -1.1 2,416,820 + Psest_2267 0.81 +0.7 2,416,821 - Psest_2267 0.81 -0.2 2,416,821 - Psest_2267 0.81 +0.2 2,417,100 + -0.9 2,417,100 + -0.2 2,417,402 + Psest_2268 0.24 -1.0 2,417,402 + Psest_2268 0.24 -0.4 2,417,402 + Psest_2268 0.24 -0.4 2,417,403 - Psest_2268 0.24 -0.1 2,417,764 + Psest_2268 0.55 -1.2 2,417,764 + Psest_2268 0.55 -0.8 2,417,928 - Psest_2268 0.69 -0.8 2,418,178 + +1.0 2,418,179 - -0.2 2,418,179 - -0.2 2,418,179 - +0.8 2,418,306 + -1.6 2,418,334 - -0.8 2,418,334 - +0.2 2,418,334 - -0.2 2,418,416 - -1.0 2,418,488 - -1.4 2,418,619 + Psest_2269 0.11 -1.1 2,418,619 + Psest_2269 0.11 +0.7 2,418,619 + Psest_2269 0.11 +0.2 2,418,620 - Psest_2269 0.12 +2.7 2,418,620 - Psest_2269 0.12 +1.3 2,418,620 - Psest_2269 0.12 -0.1 2,418,620 - Psest_2269 0.12 -0.3 2,418,685 + Psest_2269 0.15 -0.2 2,418,686 - Psest_2269 0.15 -0.3 2,418,686 - Psest_2269 0.15 +0.0 2,418,799 + Psest_2269 0.21 -0.4 2,418,799 + Psest_2269 0.21 -0.3 2,418,799 + Psest_2269 0.21 -1.1 2,418,800 - Psest_2269 0.21 +0.7 2,419,027 + Psest_2269 0.33 -0.5 2,419,079 + Psest_2269 0.36 -0.8 2,419,080 - Psest_2269 0.36 -1.2
Or see this region's nucleotide sequence