Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0795 and Psest_0796 overlap by 4 nucleotides Psest_0796 and Psest_0797 are separated by 25 nucleotides Psest_0797 and Psest_0798 are separated by 45 nucleotides Psest_0798 and Psest_0799 are separated by 322 nucleotides
Psest_0795: Psest_0795 - ABC-type multidrug transport system, ATPase component, at 870,523 to 871,449
_0795
Psest_0796: Psest_0796 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 871,446 to 872,276
_0796
Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874
_0797
Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102
_0798
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Position (kb) 872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.399 kb on + strand at 871.400 kb on - strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.668 kb on + strand, within Psest_0796 at 871.722 kb on + strand, within Psest_0796 at 871.929 kb on + strand, within Psest_0796 at 871.929 kb on + strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 872.107 kb on - strand, within Psest_0796 at 872.302 kb on - strand at 872.302 kb on - strand at 872.302 kb on - strand at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.912 kb on - strand at 872.928 kb on + strand at 873.100 kb on + strand at 873.100 kb on + strand at 873.101 kb on - strand at 873.191 kb on - strand at 873.270 kb on + strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.328 kb on - strand at 873.334 kb on + strand at 873.334 kb on + strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.351 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.432 kb on + strand at 873.432 kb on + strand at 873.433 kb on - strand at 873.457 kb on + strand at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 871,399 + -0.2 871,400 - +0.2 871,402 + -1.2 871,402 + -3.1 871,402 + -0.0 871,402 + -1.9 871,402 + -1.3 871,402 + -2.4 871,402 + -2.2 871,403 - -0.2 871,403 - -2.1 871,403 - +0.4 871,403 - -2.2 871,403 - +0.7 871,403 - -2.1 871,403 - -1.7 871,403 - -1.4 871,668 + Psest_0796 0.27 -1.7 871,722 + Psest_0796 0.33 -1.3 871,929 + Psest_0796 0.58 +1.0 871,929 + Psest_0796 0.58 -0.6 871,930 - Psest_0796 0.58 -1.3 871,930 - Psest_0796 0.58 -0.9 871,930 - Psest_0796 0.58 -0.3 872,107 - Psest_0796 0.80 -0.7 872,302 - -0.5 872,302 - -2.0 872,302 - +1.0 872,581 + Psest_0797 0.49 -2.6 872,581 + Psest_0797 0.49 +0.8 872,581 + Psest_0797 0.49 +0.0 872,581 + Psest_0797 0.49 -2.0 872,581 + Psest_0797 0.49 -0.6 872,582 - Psest_0797 0.49 -0.7 872,582 - Psest_0797 0.49 -1.6 872,582 - Psest_0797 0.49 +2.0 872,582 - Psest_0797 0.49 -2.4 872,653 + Psest_0797 0.61 +0.4 872,653 + Psest_0797 0.61 -2.2 872,654 - Psest_0797 0.61 +0.0 872,654 - Psest_0797 0.61 -2.0 872,654 - Psest_0797 0.61 -0.8 872,654 - Psest_0797 0.61 -0.2 872,654 - Psest_0797 0.61 +0.0 872,656 + Psest_0797 0.62 -1.2 872,656 + Psest_0797 0.62 -1.0 872,656 + Psest_0797 0.62 -2.0 872,656 + Psest_0797 0.62 -0.8 872,656 + Psest_0797 0.62 -1.5 872,656 + Psest_0797 0.62 +0.4 872,656 + Psest_0797 0.62 +1.0 872,656 + Psest_0797 0.62 -2.4 872,656 + Psest_0797 0.62 -1.8 872,656 + Psest_0797 0.62 -0.6 872,657 - Psest_0797 0.62 -1.5 872,657 - Psest_0797 0.62 -0.3 872,657 - Psest_0797 0.62 -2.1 872,657 - Psest_0797 0.62 +0.4 872,657 - Psest_0797 0.62 +0.0 872,657 - Psest_0797 0.62 +1.0 872,657 - Psest_0797 0.62 +0.4 872,657 - Psest_0797 0.62 -1.0 872,657 - Psest_0797 0.62 -0.8 872,657 - Psest_0797 0.62 -1.6 872,657 - Psest_0797 0.62 -1.1 872,657 - Psest_0797 0.62 -2.0 872,657 - Psest_0797 0.62 +1.0 872,657 - Psest_0797 0.62 -2.0 872,657 - Psest_0797 0.62 -0.6 872,657 - Psest_0797 0.62 +0.0 872,912 - +0.2 872,928 + +0.1 873,100 + -1.3 873,100 + +1.0 873,101 - +1.6 873,191 - -1.1 873,270 + +0.3 873,271 - +2.0 873,271 - +0.5 873,271 - -0.8 873,320 + +0.4 873,320 + +1.4 873,320 + -1.2 873,328 - -1.2 873,334 + -0.3 873,334 + -0.8 873,335 - -0.9 873,335 - -0.3 873,335 - -0.3 873,335 - -1.9 873,335 - -0.6 873,335 - -0.6 873,351 + -1.0 873,388 + -0.9 873,388 + -1.0 873,388 + +1.4 873,388 + -1.6 873,389 - -1.0 873,389 - -0.9 873,389 - -0.5 873,389 - -1.3 873,432 + -1.5 873,432 + -1.5 873,433 - -0.8 873,457 + -0.6 873,853 + Psest_0799 0.36 +0.4 873,853 + Psest_0799 0.36 -1.7 873,854 - Psest_0799 0.36 -2.1 873,854 - Psest_0799 0.36 -2.2
Or see this region's nucleotide sequence