Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3380

Experiment: Nitrite/ lactate media with Nitrite 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3379 and Psest_3380 are separated by 1 nucleotidesPsest_3380 and Psest_3381 are separated by 84 nucleotides Psest_3379: Psest_3379 - isoleucyl-tRNA synthetase, at 3,548,087 to 3,550,918 _3379 Psest_3380: Psest_3380 - riboflavin kinase/FMN adenylyltransferase, at 3,550,920 to 3,551,870 _3380 Psest_3381: Psest_3381 - integral membrane protein MviN, at 3,551,955 to 3,553,502 _3381 Position (kb) 3550 3551 3552Strain fitness (log2 ratio) -2 -1 0 1 2at 3551.902 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.964 kb on + strandat 3551.965 kb on - strandat 3551.965 kb on - strandat 3551.965 kb on - strandat 3551.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM
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3,551,902 - +0.1
3,551,904 - +1.1
3,551,904 - -0.2
3,551,904 - -0.1
3,551,904 - +0.4
3,551,904 - -0.9
3,551,904 - +0.1
3,551,964 + -0.2
3,551,965 - -2.0
3,551,965 - +0.6
3,551,965 - +1.8
3,551,965 - +1.5

Or see this region's nucleotide sequence