Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2266

Experiment: Nitrite/ lactate media with Nitrite 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2265 and Psest_2266 are separated by 91 nucleotidesPsest_2266 and Psest_2267 are separated by 50 nucleotides Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960 _2265 Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396 _2266 Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144 _2267 Position (kb) 2415 2416Strain fitness (log2 ratio) -2 -1 0 1 2at 2414.105 kb on - strand, within Psest_2265at 2414.126 kb on - strand, within Psest_2265at 2414.209 kb on + strand, within Psest_2265at 2414.441 kb on + strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.936 kb on - strandat 2414.943 kb on + strandat 2414.943 kb on + strandat 2415.158 kb on - strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.387 kb on - strandat 2415.679 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2416.175 kb on + strand, within Psest_2267at 2416.339 kb on + strand, within Psest_2267at 2416.339 kb on + strand, within Psest_2267

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM
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2,414,105 - Psest_2265 0.32 +0.9
2,414,126 - Psest_2265 0.33 +0.3
2,414,209 + Psest_2265 0.40 -0.1
2,414,441 + Psest_2265 0.59 -0.5
2,414,614 - Psest_2265 0.72 +0.6
2,414,614 - Psest_2265 0.72 -1.1
2,414,936 - +0.3
2,414,943 + +0.7
2,414,943 + -1.4
2,415,158 - Psest_2266 0.31 +1.9
2,415,228 + Psest_2266 0.51 +0.9
2,415,228 + Psest_2266 0.51 +0.7
2,415,228 + Psest_2266 0.51 -1.7
2,415,229 - Psest_2266 0.51 -2.1
2,415,229 - Psest_2266 0.51 +0.9
2,415,229 - Psest_2266 0.51 -0.8
2,415,387 - -0.1
2,415,679 + Psest_2267 0.14 -0.2
2,415,912 + Psest_2267 0.27 +0.1
2,415,912 + Psest_2267 0.27 +1.9
2,415,912 + Psest_2267 0.27 +0.1
2,416,175 + Psest_2267 0.43 +1.1
2,416,339 + Psest_2267 0.53 -0.4
2,416,339 + Psest_2267 0.53 +0.5

Or see this region's nucleotide sequence