Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1137 and Psest_1138 overlap by 8 nucleotides Psest_1138 and Psest_1139 are separated by 19 nucleotides
Psest_1137: Psest_1137 - hypothetical protein, at 1,234,405 to 1,235,433
_1137
Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016
_1138
Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051
_1139
Position (kb) 1235
1236
1237 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1234.754 kb on + strand, within Psest_1137 at 1234.755 kb on - strand, within Psest_1137 at 1234.755 kb on - strand, within Psest_1137 at 1234.755 kb on - strand, within Psest_1137 at 1234.755 kb on - strand, within Psest_1137 at 1234.755 kb on - strand, within Psest_1137 at 1234.822 kb on - strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.964 kb on + strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.965 kb on - strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.967 kb on + strand, within Psest_1137 at 1234.968 kb on - strand, within Psest_1137 at 1234.968 kb on - strand, within Psest_1137 at 1234.968 kb on - strand, within Psest_1137 at 1234.968 kb on - strand, within Psest_1137 at 1234.968 kb on - strand, within Psest_1137 at 1234.988 kb on + strand, within Psest_1137 at 1235.074 kb on + strand, within Psest_1137 at 1235.108 kb on + strand, within Psest_1137 at 1235.108 kb on + strand, within Psest_1137 at 1235.109 kb on - strand, within Psest_1137 at 1235.109 kb on - strand, within Psest_1137 at 1235.109 kb on - strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.129 kb on + strand, within Psest_1137 at 1235.130 kb on - strand, within Psest_1137 at 1235.130 kb on - strand, within Psest_1137 at 1235.132 kb on + strand, within Psest_1137 at 1235.132 kb on + strand, within Psest_1137 at 1235.132 kb on + strand, within Psest_1137 at 1235.132 kb on + strand, within Psest_1137 at 1235.222 kb on + strand, within Psest_1137 at 1235.222 kb on + strand, within Psest_1137 at 1235.223 kb on - strand, within Psest_1137 at 1235.292 kb on + strand, within Psest_1137 at 1235.292 kb on + strand, within Psest_1137 at 1235.314 kb on + strand, within Psest_1137 at 1235.314 kb on + strand, within Psest_1137 at 1235.315 kb on - strand, within Psest_1137 at 1235.315 kb on - strand, within Psest_1137 at 1235.870 kb on + strand, within Psest_1138 at 1236.022 kb on - strand at 1236.022 kb on - strand at 1236.025 kb on - strand at 1236.154 kb on + strand at 1236.154 kb on + strand at 1236.154 kb on + strand at 1236.155 kb on - strand at 1236.495 kb on + strand, within Psest_1139 at 1236.938 kb on - strand, within Psest_1139
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 1,234,754 + Psest_1137 0.34 -1.4 1,234,755 - Psest_1137 0.34 -1.2 1,234,755 - Psest_1137 0.34 -2.3 1,234,755 - Psest_1137 0.34 -1.1 1,234,755 - Psest_1137 0.34 -0.7 1,234,755 - Psest_1137 0.34 +1.9 1,234,822 - Psest_1137 0.41 -0.1 1,234,964 + Psest_1137 0.54 +0.2 1,234,964 + Psest_1137 0.54 -0.3 1,234,964 + Psest_1137 0.54 -1.3 1,234,964 + Psest_1137 0.54 -0.3 1,234,964 + Psest_1137 0.54 -0.1 1,234,964 + Psest_1137 0.54 -0.0 1,234,964 + Psest_1137 0.54 -0.1 1,234,964 + Psest_1137 0.54 -0.7 1,234,964 + Psest_1137 0.54 +0.1 1,234,964 + Psest_1137 0.54 +0.1 1,234,964 + Psest_1137 0.54 +0.7 1,234,964 + Psest_1137 0.54 +0.0 1,234,964 + Psest_1137 0.54 +0.6 1,234,964 + Psest_1137 0.54 +0.6 1,234,964 + Psest_1137 0.54 -0.9 1,234,964 + Psest_1137 0.54 -0.5 1,234,964 + Psest_1137 0.54 +0.9 1,234,965 - Psest_1137 0.54 -0.4 1,234,965 - Psest_1137 0.54 -0.0 1,234,965 - Psest_1137 0.54 +0.4 1,234,965 - Psest_1137 0.54 -1.5 1,234,965 - Psest_1137 0.54 -0.2 1,234,965 - Psest_1137 0.54 +0.0 1,234,965 - Psest_1137 0.54 +0.9 1,234,965 - Psest_1137 0.54 +0.0 1,234,965 - Psest_1137 0.54 -0.1 1,234,965 - Psest_1137 0.54 -0.1 1,234,965 - Psest_1137 0.54 -1.1 1,234,965 - Psest_1137 0.54 +0.5 1,234,965 - Psest_1137 0.54 +1.3 1,234,965 - Psest_1137 0.54 -0.7 1,234,965 - Psest_1137 0.54 +0.6 1,234,965 - Psest_1137 0.54 -0.7 1,234,965 - Psest_1137 0.54 -1.2 1,234,965 - Psest_1137 0.54 -0.5 1,234,965 - Psest_1137 0.54 -0.4 1,234,965 - Psest_1137 0.54 +0.4 1,234,965 - Psest_1137 0.54 +0.4 1,234,965 - Psest_1137 0.54 -0.7 1,234,965 - Psest_1137 0.54 +0.3 1,234,965 - Psest_1137 0.54 +0.6 1,234,965 - Psest_1137 0.54 +1.5 1,234,967 + Psest_1137 0.55 -0.4 1,234,967 + Psest_1137 0.55 -0.4 1,234,967 + Psest_1137 0.55 -0.4 1,234,967 + Psest_1137 0.55 +0.9 1,234,967 + Psest_1137 0.55 +0.5 1,234,967 + Psest_1137 0.55 -0.9 1,234,967 + Psest_1137 0.55 -0.1 1,234,967 + Psest_1137 0.55 +0.3 1,234,967 + Psest_1137 0.55 +3.5 1,234,968 - Psest_1137 0.55 -0.2 1,234,968 - Psest_1137 0.55 +0.9 1,234,968 - Psest_1137 0.55 -1.0 1,234,968 - Psest_1137 0.55 -0.1 1,234,968 - Psest_1137 0.55 +0.4 1,234,988 + Psest_1137 0.57 +0.8 1,235,074 + Psest_1137 0.65 -0.1 1,235,108 + Psest_1137 0.68 -1.3 1,235,108 + Psest_1137 0.68 -0.3 1,235,109 - Psest_1137 0.68 -0.0 1,235,109 - Psest_1137 0.68 -0.2 1,235,109 - Psest_1137 0.68 +0.9 1,235,129 + Psest_1137 0.70 -0.1 1,235,129 + Psest_1137 0.70 -0.9 1,235,129 + Psest_1137 0.70 -0.4 1,235,129 + Psest_1137 0.70 +1.3 1,235,129 + Psest_1137 0.70 -0.7 1,235,129 + Psest_1137 0.70 -0.7 1,235,129 + Psest_1137 0.70 +0.7 1,235,129 + Psest_1137 0.70 -0.3 1,235,129 + Psest_1137 0.70 -0.1 1,235,129 + Psest_1137 0.70 -1.0 1,235,129 + Psest_1137 0.70 +0.3 1,235,129 + Psest_1137 0.70 -0.6 1,235,129 + Psest_1137 0.70 -0.1 1,235,129 + Psest_1137 0.70 +0.9 1,235,130 - Psest_1137 0.70 +0.7 1,235,130 - Psest_1137 0.70 -1.0 1,235,132 + Psest_1137 0.71 +0.4 1,235,132 + Psest_1137 0.71 -1.4 1,235,132 + Psest_1137 0.71 +0.9 1,235,132 + Psest_1137 0.71 +0.2 1,235,222 + Psest_1137 0.79 -0.6 1,235,222 + Psest_1137 0.79 +0.8 1,235,223 - Psest_1137 0.79 +0.3 1,235,292 + Psest_1137 0.86 +0.3 1,235,292 + Psest_1137 0.86 +1.9 1,235,314 + Psest_1137 0.88 -0.4 1,235,314 + Psest_1137 0.88 -0.1 1,235,315 - Psest_1137 0.88 -0.4 1,235,315 - Psest_1137 0.88 -0.1 1,235,870 + Psest_1138 0.75 -1.4 1,236,022 - -0.3 1,236,022 - +1.9 1,236,025 - +1.1 1,236,154 + +0.9 1,236,154 + +0.3 1,236,154 + +1.9 1,236,155 - -0.8 1,236,495 + Psest_1139 0.23 +0.3 1,236,938 - Psest_1139 0.45 -1.4
Or see this region's nucleotide sequence