Experiment: Nitrite/ lactate media with Nitrite 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0099 and Psest_0100 are separated by 48 nucleotides Psest_0100 and Psest_0101 are separated by 275 nucleotides
Psest_0099: Psest_0099 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 98,253 to 99,257
_0099
Psest_0100: Psest_0100 - phosphonate ABC transporter, ATP-binding protein, at 99,306 to 100,136
_0100
Psest_0101: Psest_0101 - Short-chain alcohol dehydrogenase of unknown specificity, at 100,412 to 101,176
_0101
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 98.506 kb on + strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.914 kb on + strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 99.042 kb on + strand, within Psest_0099 at 99.392 kb on - strand, within Psest_0100 at 99.481 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.868 kb on + strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 100.185 kb on - strand at 100.196 kb on + strand at 100.196 kb on + strand at 100.221 kb on + strand at 100.221 kb on + strand at 100.336 kb on + strand at 100.428 kb on + strand at 100.428 kb on + strand at 100.428 kb on + strand at 100.429 kb on - strand at 100.429 kb on - strand at 100.429 kb on - strand at 100.868 kb on + strand, within Psest_0101 at 100.907 kb on - strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.078 kb on + strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101 at 101.079 kb on - strand, within Psest_0101
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM remove 98,506 + Psest_0099 0.25 -0.2 98,507 - Psest_0099 0.25 +0.6 98,507 - Psest_0099 0.25 -0.5 98,782 + Psest_0099 0.53 -0.2 98,782 + Psest_0099 0.53 -0.0 98,782 + Psest_0099 0.53 -0.8 98,782 + Psest_0099 0.53 -0.0 98,782 + Psest_0099 0.53 +0.2 98,782 + Psest_0099 0.53 +0.4 98,783 - Psest_0099 0.53 -1.0 98,783 - Psest_0099 0.53 -0.4 98,783 - Psest_0099 0.53 +0.4 98,783 - Psest_0099 0.53 +0.1 98,783 - Psest_0099 0.53 +0.6 98,783 - Psest_0099 0.53 +1.1 98,783 - Psest_0099 0.53 -0.6 98,911 + Psest_0099 0.65 +2.0 98,911 + Psest_0099 0.65 +0.2 98,911 + Psest_0099 0.65 +0.0 98,911 + Psest_0099 0.65 -0.1 98,912 - Psest_0099 0.66 +0.1 98,912 - Psest_0099 0.66 -0.8 98,912 - Psest_0099 0.66 +0.1 98,912 - Psest_0099 0.66 -0.9 98,914 + Psest_0099 0.66 +1.4 98,915 - Psest_0099 0.66 +0.9 98,915 - Psest_0099 0.66 +1.0 99,042 + Psest_0099 0.79 +1.6 99,392 - Psest_0100 0.10 -0.5 99,481 + Psest_0100 0.21 +0.0 99,493 + Psest_0100 0.23 -1.7 99,493 + Psest_0100 0.23 +0.4 99,868 + Psest_0100 0.68 -0.4 99,869 - Psest_0100 0.68 -2.9 99,869 - Psest_0100 0.68 +3.0 99,894 + Psest_0100 0.71 -0.6 99,894 + Psest_0100 0.71 -1.1 99,894 + Psest_0100 0.71 -1.8 99,894 + Psest_0100 0.71 -0.0 99,895 - Psest_0100 0.71 +0.5 99,895 - Psest_0100 0.71 -0.0 99,895 - Psest_0100 0.71 +2.3 100,185 - +0.3 100,196 + -0.7 100,196 + -0.0 100,221 + -0.9 100,221 + +2.0 100,336 + -0.3 100,428 + +1.0 100,428 + +0.7 100,428 + -0.4 100,429 - +0.0 100,429 - +0.6 100,429 - -0.0 100,868 + Psest_0101 0.60 +0.3 100,907 - Psest_0101 0.65 -0.6 101,078 + Psest_0101 0.87 +1.1 101,078 + Psest_0101 0.87 +1.0 101,078 + Psest_0101 0.87 -0.4 101,078 + Psest_0101 0.87 +1.0 101,078 + Psest_0101 0.87 -0.7 101,079 - Psest_0101 0.87 -0.9 101,079 - Psest_0101 0.87 -0.2 101,079 - Psest_0101 0.87 -0.6
Or see this region's nucleotide sequence