Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0811

Experiment: Nitrite/ lactate media with Nitrite 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0809 and Psest_0810 overlap by 10 nucleotidesPsest_0810 and Psest_0811 are separated by 69 nucleotidesPsest_0811 and Psest_0812 are separated by 170 nucleotidesPsest_0812 and Psest_0813 are separated by 3 nucleotides Psest_0809: Psest_0809 - Cytochrome c, mono- and diheme variants, at 884,254 to 885,765 _0809 Psest_0810: Psest_0810 - uroporphyrin-III C-methyltransferase, at 885,756 to 886,592 _0810 Psest_0811: Psest_0811 - heme d1 biosynthesis radical SAM protein NirJ, at 886,662 to 887,843 _0811 Psest_0812: Psest_0812 - hypothetical protein, at 888,014 to 888,262 _0812 Psest_0813: Psest_0813 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 888,266 to 888,853 _0813 Psest_0814: Psest_0814 - MoxR-like ATPases, at 888,837 to 889,649 _0814 Position (kb) 886 887 888Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 885.765 kb on + strandat 885.765 kb on + strandat 885.766 kb on - strandat 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.039 kb on + strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.040 kb on - strand, within Psest_0810at 886.171 kb on + strand, within Psest_0810at 886.171 kb on + strand, within Psest_0810at 886.172 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.388 kb on - strand, within Psest_0810at 886.447 kb on + strand, within Psest_0810at 886.620 kb on + strandat 886.621 kb on - strandat 886.621 kb on - strandat 886.936 kb on + strand, within Psest_0811at 886.936 kb on + strand, within Psest_0811at 886.936 kb on + strand, within Psest_0811at 886.936 kb on + strand, within Psest_0811at 886.937 kb on - strand, within Psest_0811at 886.937 kb on - strand, within Psest_0811at 886.937 kb on - strand, within Psest_0811at 886.979 kb on + strand, within Psest_0811at 886.997 kb on + strand, within Psest_0811at 887.130 kb on + strand, within Psest_0811at 887.130 kb on + strand, within Psest_0811at 887.130 kb on + strand, within Psest_0811at 887.130 kb on + strand, within Psest_0811at 887.130 kb on + strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.131 kb on - strand, within Psest_0811at 887.227 kb on + strand, within Psest_0811at 887.227 kb on + strand, within Psest_0811at 887.228 kb on - strand, within Psest_0811at 887.228 kb on - strand, within Psest_0811at 887.228 kb on - strand, within Psest_0811at 887.245 kb on + strand, within Psest_0811at 887.245 kb on + strand, within Psest_0811at 887.245 kb on + strand, within Psest_0811at 887.246 kb on - strand, within Psest_0811at 887.302 kb on + strand, within Psest_0811at 887.302 kb on + strand, within Psest_0811at 887.302 kb on + strand, within Psest_0811at 887.303 kb on - strand, within Psest_0811at 887.321 kb on + strand, within Psest_0811at 887.452 kb on + strand, within Psest_0811at 887.453 kb on - strand, within Psest_0811at 887.702 kb on - strand, within Psest_0811at 887.702 kb on - strand, within Psest_0811at 887.791 kb on - strandat 887.791 kb on - strandat 887.824 kb on + strandat 887.825 kb on - strandat 887.955 kb on - strandat 888.267 kb on + strandat 888.267 kb on + strandat 888.267 kb on + strandat 888.267 kb on + strandat 888.268 kb on - strandat 888.268 kb on - strandat 888.268 kb on - strandat 888.279 kb on + strandat 888.279 kb on + strandat 888.279 kb on + strandat 888.311 kb on - strandat 888.328 kb on - strand, within Psest_0813at 888.460 kb on - strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.540 kb on + strand, within Psest_0813at 888.541 kb on - strand, within Psest_0813at 888.605 kb on + strand, within Psest_0813at 888.605 kb on + strand, within Psest_0813at 888.606 kb on - strand, within Psest_0813

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM
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885,765 + +0.0
885,765 + -1.3
885,766 - +0.3
886,039 + Psest_0810 0.34 +1.0
886,039 + Psest_0810 0.34 -0.6
886,039 + Psest_0810 0.34 -1.9
886,039 + Psest_0810 0.34 -1.3
886,040 - Psest_0810 0.34 -1.8
886,040 - Psest_0810 0.34 +0.7
886,040 - Psest_0810 0.34 -3.2
886,040 - Psest_0810 0.34 -1.9
886,040 - Psest_0810 0.34 +0.6
886,040 - Psest_0810 0.34 -2.0
886,040 - Psest_0810 0.34 -2.5
886,040 - Psest_0810 0.34 +0.7
886,171 + Psest_0810 0.50 -2.6
886,171 + Psest_0810 0.50 -1.7
886,172 - Psest_0810 0.50 -0.3
886,388 - Psest_0810 0.76 +2.0
886,388 - Psest_0810 0.76 -1.7
886,388 - Psest_0810 0.76 -2.0
886,447 + Psest_0810 0.83 +0.4
886,620 + +0.1
886,621 - -0.3
886,621 - -0.8
886,936 + Psest_0811 0.23 -2.3
886,936 + Psest_0811 0.23 -0.6
886,936 + Psest_0811 0.23 -0.3
886,936 + Psest_0811 0.23 -1.6
886,937 - Psest_0811 0.23 -1.8
886,937 - Psest_0811 0.23 -1.3
886,937 - Psest_0811 0.23 -0.6
886,979 + Psest_0811 0.27 -1.2
886,997 + Psest_0811 0.28 -1.5
887,130 + Psest_0811 0.40 -1.7
887,130 + Psest_0811 0.40 -2.4
887,130 + Psest_0811 0.40 -2.0
887,130 + Psest_0811 0.40 -0.8
887,130 + Psest_0811 0.40 -2.6
887,131 - Psest_0811 0.40 -2.9
887,131 - Psest_0811 0.40 -2.2
887,131 - Psest_0811 0.40 -2.0
887,131 - Psest_0811 0.40 -1.3
887,131 - Psest_0811 0.40 +0.0
887,131 - Psest_0811 0.40 -0.3
887,131 - Psest_0811 0.40 -1.4
887,227 + Psest_0811 0.48 -0.7
887,227 + Psest_0811 0.48 +0.4
887,228 - Psest_0811 0.48 -1.9
887,228 - Psest_0811 0.48 -1.5
887,228 - Psest_0811 0.48 -1.0
887,245 + Psest_0811 0.49 -2.5
887,245 + Psest_0811 0.49 -0.8
887,245 + Psest_0811 0.49 +0.4
887,246 - Psest_0811 0.49 -1.0
887,302 + Psest_0811 0.54 -2.6
887,302 + Psest_0811 0.54 -1.2
887,302 + Psest_0811 0.54 -2.0
887,303 - Psest_0811 0.54 -1.9
887,321 + Psest_0811 0.56 -1.5
887,452 + Psest_0811 0.67 -0.8
887,453 - Psest_0811 0.67 -1.0
887,702 - Psest_0811 0.88 -3.4
887,702 - Psest_0811 0.88 -1.6
887,791 - -1.4
887,791 - -0.6
887,824 + +2.0
887,825 - -0.6
887,955 - -0.1
888,267 + +0.4
888,267 + -1.3
888,267 + -2.3
888,267 + -0.3
888,268 - -1.6
888,268 - -2.2
888,268 - -3.2
888,279 + -1.8
888,279 + -1.2
888,279 + +1.0
888,311 - -2.9
888,328 - Psest_0813 0.11 -1.2
888,460 - Psest_0813 0.33 -1.2
888,540 + Psest_0813 0.47 -1.0
888,540 + Psest_0813 0.47 -3.6
888,540 + Psest_0813 0.47 -0.2
888,540 + Psest_0813 0.47 +0.4
888,540 + Psest_0813 0.47 -0.3
888,540 + Psest_0813 0.47 -0.9
888,541 - Psest_0813 0.47 -0.6
888,605 + Psest_0813 0.58 +0.7
888,605 + Psest_0813 0.58 -0.2
888,606 - Psest_0813 0.58 -0.9

Or see this region's nucleotide sequence