Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0833

Experiment: Nitrite/ lactate media with Nitrite 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0831 and Psest_0832 overlap by 4 nucleotidesPsest_0832 and Psest_0833 are separated by 145 nucleotidesPsest_0833 and Psest_0834 are separated by 73 nucleotidesPsest_0834 and Psest_0835 are separated by 192 nucleotides Psest_0831: Psest_0831 - hypothetical protein, at 902,892 to 903,410 _0831 Psest_0832: Psest_0832 - iron-sulfur cluster repair di-iron protein, at 903,407 to 904,126 _0832 Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801 _0833 Psest_0834: Psest_0834 - hypothetical protein, at 905,875 to 906,084 _0834 Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272 _0835 Position (kb) 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 903.400 kb on + strandat 903.400 kb on + strandat 903.400 kb on + strandat 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.485 kb on + strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.486 kb on - strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.562 kb on + strand, within Psest_0832at 903.586 kb on + strand, within Psest_0832at 903.645 kb on + strand, within Psest_0832at 903.888 kb on + strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.017 kb on - strand, within Psest_0832at 904.058 kb on + strandat 904.059 kb on - strandat 904.059 kb on - strandat 904.168 kb on - strandat 904.239 kb on - strandat 904.552 kb on - strand, within Psest_0833at 904.620 kb on + strand, within Psest_0833at 904.621 kb on - strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.994 kb on - strand, within Psest_0833at 904.994 kb on - strand, within Psest_0833at 905.171 kb on + strand, within Psest_0833at 905.171 kb on + strand, within Psest_0833at 905.873 kb on + strandat 905.873 kb on + strandat 905.874 kb on - strandat 905.874 kb on - strandat 905.874 kb on - strandat 906.254 kb on + strandat 906.267 kb on - strandat 906.267 kb on - strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.395 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.463 kb on - strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.478 kb on + strand, within Psest_0835at 906.479 kb on - strand, within Psest_0835at 906.662 kb on - strand, within Psest_0835

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrite/ lactate media with Nitrite 20mM
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903,400 + -0.1
903,400 + -1.4
903,400 + -0.8
903,485 + Psest_0832 0.11 +1.9
903,485 + Psest_0832 0.11 -1.1
903,485 + Psest_0832 0.11 -2.1
903,485 + Psest_0832 0.11 +0.1
903,485 + Psest_0832 0.11 -1.1
903,485 + Psest_0832 0.11 -1.0
903,486 - Psest_0832 0.11 +1.9
903,486 - Psest_0832 0.11 +0.4
903,486 - Psest_0832 0.11 -1.5
903,486 - Psest_0832 0.11 +1.3
903,486 - Psest_0832 0.11 +0.2
903,486 - Psest_0832 0.11 -1.5
903,486 - Psest_0832 0.11 -0.1
903,486 - Psest_0832 0.11 -0.4
903,486 - Psest_0832 0.11 -3.2
903,486 - Psest_0832 0.11 +0.4
903,486 - Psest_0832 0.11 -0.5
903,486 - Psest_0832 0.11 +1.2
903,486 - Psest_0832 0.11 +0.9
903,486 - Psest_0832 0.11 -0.4
903,562 + Psest_0832 0.22 -1.5
903,562 + Psest_0832 0.22 +1.2
903,562 + Psest_0832 0.22 -0.9
903,586 + Psest_0832 0.25 -0.1
903,645 + Psest_0832 0.33 -2.9
903,888 + Psest_0832 0.67 -1.4
904,017 - Psest_0832 0.85 -0.5
904,017 - Psest_0832 0.85 -0.5
904,017 - Psest_0832 0.85 +0.3
904,058 + +0.4
904,059 - +0.3
904,059 - -1.1
904,168 - -2.0
904,239 - -2.0
904,552 - Psest_0833 0.18 -0.4
904,620 + Psest_0833 0.23 -0.1
904,621 - Psest_0833 0.23 +0.1
904,993 + Psest_0833 0.47 -0.8
904,993 + Psest_0833 0.47 -1.8
904,993 + Psest_0833 0.47 -1.9
904,993 + Psest_0833 0.47 +0.1
904,994 - Psest_0833 0.47 +0.1
904,994 - Psest_0833 0.47 +0.9
905,171 + Psest_0833 0.59 -1.6
905,171 + Psest_0833 0.59 +1.4
905,873 + +1.6
905,873 + +0.9
905,874 - -0.2
905,874 - +0.9
905,874 - +1.9
906,254 + -0.4
906,267 - -1.6
906,267 - -0.5
906,349 + -0.9
906,349 + -1.1
906,349 + -0.4
906,349 + -2.0
906,349 + -1.0
906,349 + +0.2
906,349 + +0.4
906,349 + +0.1
906,349 + -0.6
906,349 + -0.9
906,349 + -0.6
906,350 - -0.8
906,350 - -1.1
906,350 - -1.5
906,350 - -1.0
906,350 - -2.7
906,350 - +0.0
906,350 - -1.2
906,350 - -0.5
906,350 - +0.7
906,350 - +0.4
906,350 - -0.6
906,350 - -2.0
906,350 - -0.5
906,350 - +0.9
906,350 - -1.3
906,395 + Psest_0835 0.12 -0.9
906,460 + Psest_0835 0.18 -1.1
906,460 + Psest_0835 0.18 -2.2
906,460 + Psest_0835 0.18 -1.5
906,460 + Psest_0835 0.18 +0.5
906,460 + Psest_0835 0.18 -1.5
906,460 + Psest_0835 0.18 +0.1
906,460 + Psest_0835 0.18 -0.5
906,460 + Psest_0835 0.18 -1.4
906,460 + Psest_0835 0.18 -0.9
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 -0.6
906,460 + Psest_0835 0.18 -1.5
906,460 + Psest_0835 0.18 -1.0
906,460 + Psest_0835 0.18 -0.4
906,460 + Psest_0835 0.18 +0.2
906,460 + Psest_0835 0.18 -2.4
906,460 + Psest_0835 0.18 -1.6
906,461 - Psest_0835 0.18 -1.2
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 +0.6
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -1.8
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 -2.0
906,461 - Psest_0835 0.18 -1.1
906,461 - Psest_0835 0.18 -1.2
906,461 - Psest_0835 0.18 +1.9
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 +0.9
906,461 - Psest_0835 0.18 -2.1
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -1.2
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -0.8
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 -3.1
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 -1.5
906,461 - Psest_0835 0.18 -1.2
906,461 - Psest_0835 0.18 -2.0
906,461 - Psest_0835 0.18 -1.2
906,461 - Psest_0835 0.18 -3.0
906,461 - Psest_0835 0.18 -0.8
906,463 - Psest_0835 0.19 -0.4
906,474 + Psest_0835 0.20 -0.6
906,474 + Psest_0835 0.20 +0.9
906,475 - Psest_0835 0.20 -0.1
906,475 - Psest_0835 0.20 +0.7
906,475 - Psest_0835 0.20 -0.1
906,475 - Psest_0835 0.20 -0.9
906,475 - Psest_0835 0.20 -0.8
906,475 - Psest_0835 0.20 +0.8
906,478 + Psest_0835 0.20 -1.2
906,479 - Psest_0835 0.20 +0.4
906,662 - Psest_0835 0.39 -0.2

Or see this region's nucleotide sequence